Factsheet for TraesCS3D01G417800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G457900.1	Wheat	plastid	97.73	98.29
TraesCS3A01G422600.1	Wheat	nucleus	88.07	89.6
HORVU3Hr1G093400.1	Barley	plastid	80.68	84.52
Os01t0916600-01	Rice	mitochondrion	61.36	72.0
Zm00001d012052_P001	Maize	mitochondrion, plastid	60.8	68.59
EES01954	Sorghum	plastid	55.11	65.99
PGSC0003DMT400001786	Potato	nucleus	17.61	44.29
TraesCS6D01G199100.1	Wheat	nucleus	38.07	43.23
TraesCS5D01G020900.1	Wheat	plastid	42.61	43.1
TraesCS4D01G018500.1	Wheat	nucleus	39.77	42.17
GSMUA_Achr11P...	Banana	mitochondrion	29.55	39.39
KRH17905	Soybean	cytosol, mitochondrion, nucleus	18.18	38.55
CDY28003	Canola	plastid	31.25	38.19
AT3G08000.1	Thale cress	plastid	30.68	37.76
VIT_12s0059g01210.t01	Wine grape	mitochondrion	29.55	37.14
Bra029692.1-P	Field mustard	mitochondrion	30.11	37.06
Solyc07g049270.2.1	Tomato	mitochondrion	29.55	36.88
KRH50325	Soybean	vacuole	28.98	36.43
TraesCS2D01G294000.1	Wheat	mitochondrion	28.41	35.97
CDY35978	Canola	mitochondrion, plastid	28.98	35.66
TraesCS3D01G424100.1	Wheat	mitochondrion	43.18	34.7
TraesCS4D01G205200.1	Wheat	mitochondrion	19.89	33.65
TraesCS2D01G217900.1	Wheat	mitochondrion	26.7	33.57
TraesCS3D01G539400.1	Wheat	mitochondrion	20.45	33.03
TraesCS5D01G473100.1	Wheat	mitochondrion	52.27	30.07
TraesCS4D01G205500.1	Wheat	plastid	27.84	28.49
TraesCS2D01G184200.1	Wheat	mitochondrion	47.16	25.54
TraesCS5D01G516500.1	Wheat	nucleus	31.82	25.23
TraesCS7D01G323600.1	Wheat	nucleus	32.39	24.78
TraesCS2D01G238900.1	Wheat	nucleus	32.39	19.45
TraesCS4D01G023800.2	Wheat	nucleus	31.25	17.3
TraesCS6D01G273200.1	Wheat	plastid	21.59	9.74

Protein Annotations

EnsemblPlants:TraesCS3D01G417800.1	EnsemblPlantsGene:TraesCS3D01G417800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44202
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:16.12.5.2

Description

No Description!

Coordinates

chr3D:+:529770999..529772079

Molecular Weight (calculated)

17199.8 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.293

Length

176 amino acids

Sequence
(BLAST)

001: MAALIKLGSL LRQSAVASSA STGSAPALFN AARFMCAGQP ADGSKLFVGG LAWATDDHSL KEAFQCFGEV VEARVITDRE TGRSRGFGFV SFASGEDAKS
101: AAENMDGKEL AGRNVRVNFA NERPSGGGGG GGFSRGGGGY GGGGGGYGGG GFGGGGGYGG GRGGGGGGYG GDRESY

Best Arabidopsis Sequence Match ( AT3G23830.1 )
(BLAST)

001: MAFCNKLSGI LRQGVSQSSN GPVTSMLGSL RYMSSKLFVG GLSWGTDDSS LKQAFTSFGE VTEATVIADR ETGRSRGFGF VSFSCEDSAN NAIKEMDGKE
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY

Arabidopsis Description

RBG4GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.