Factsheet for TraesCS3B01G457900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G417800.1	Wheat	plastid	98.29	97.73
TraesCS3A01G422600.1	Wheat	nucleus	89.14	90.17
HORVU3Hr1G093400.1	Barley	plastid	81.71	85.12
Os01t0916600-01	Rice	mitochondrion	62.86	73.33
Zm00001d012052_P001	Maize	mitochondrion, plastid	62.29	69.87
EES01954	Sorghum	plastid	56.0	66.67
TraesCS5B01G013200.1	Wheat	nucleus	42.86	44.91
TraesCS4B01G020300.1	Wheat	extracellular	40.57	43.56
TraesCS6B01G246400.1	Wheat	nucleus	40.0	43.21
TraesCS2B01G312500.1	Wheat	mitochondrion	28.0	35.25
TraesCS3B01G465800.1	Wheat	mitochondrion	45.71	34.63
TraesCS2B01G237100.1	Wheat	mitochondrion	26.86	33.81
TraesCS4B01G204300.1	Wheat	mitochondrion	20.0	33.02
TraesCS3B01G454200.1	Wheat	mitochondrion	26.29	31.51
TraesCS3B01G610900.1	Wheat	mitochondrion	19.43	31.19
TraesCS5B01G470700.1	Wheat	mitochondrion	53.14	30.29
TraesCS7B01G207500.1	Wheat	mitochondrion	25.71	29.61
TraesCS4B01G204600.1	Wheat	plastid	28.0	28.66
TraesCS2B01G203200.1	Wheat	mitochondrion	46.86	25.71
TraesCS7B01G227500.2	Wheat	nucleus	32.57	24.78
TraesCS5B01G516400.1	Wheat	nucleus	30.86	24.66
TraesCS2B01G259400.1	Wheat	nucleus	32.57	19.45
TraesCS4B01G026400.1	Wheat	nucleus	32.0	17.55
TraesCS6B01G322400.1	Wheat	plastid	21.14	9.54

Protein Annotations

EnsemblPlants:TraesCS3B01G457900.1	EnsemblPlantsGene:TraesCS3B01G457900	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44202
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:16.12.5.2

Description

No Description!

Coordinates

chr3B:+:700358851..700360772

Molecular Weight (calculated)

17123.6 Da

IEP (calculated)

7.507

GRAVY (calculated)

-0.327

Length

175 amino acids

Sequence
(BLAST)

001: MAALIKLGSL LRQSAVASSA STGSAPALFN AARFMCAGQP ADGSKLFVGG LAWATDDHSL KEAFQSFGEV VEARVITDRE TGRSRGFGFV SFASGEDAKS
101: AAENMDGKEL AGRNVRVNFA NERPSGGGGG GFSRGGGGYG GGGGGYGGGG YGGGGGYGGG RGGGGGGYGG DHESY

Best Arabidopsis Sequence Match ( AT3G23830.1 )
(BLAST)

001: MAFCNKLSGI LRQGVSQSSN GPVTSMLGSL RYMSSKLFVG GLSWGTDDSS LKQAFTSFGE VTEATVIADR ETGRSRGFGF VSFSCEDSAN NAIKEMDGKE
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY

Arabidopsis Description

RBG4GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.