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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 29575040 doi
WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES01954 Sorghum plastid 77.56 82.31
Os01t0916600-01 Rice mitochondrion 68.59 71.33
HORVU3Hr1G093400.1 Barley plastid 67.95 63.1
TraesCS3B01G457900.1 Wheat plastid 69.87 62.29
TraesCS3A01G422600.1 Wheat nucleus 67.95 61.27
TraesCS3D01G417800.1 Wheat plastid 68.59 60.8
Zm00001d041246_P001 Maize nucleus 40.38 43.45
Zm00001d013568_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 42.95 42.14
PGSC0003DMT400001786 Potato nucleus 18.59 41.43
Zm00001d031168_P001 Maize plastid 40.38 40.65
GSMUA_Achr11P... Banana mitochondrion 32.05 37.88
Solyc07g049270.2.1 Tomato mitochondrion 33.33 36.88
VIT_12s0059g01210.t01 Wine grape mitochondrion 32.69 36.43
CDY28003 Canola plastid 33.33 36.11
KRH17905 Soybean cytosol, mitochondrion, nucleus 18.59 34.94
KRH50325 Soybean vacuole 30.77 34.29
Bra029692.1-P Field mustard mitochondrion 31.41 34.27
AT3G08000.1 Thale cress plastid 31.41 34.27
Zm00001d006566_P002 Maize mitochondrion 25.0 33.91
Zm00001d041750_P001 Maize mitochondrion 55.77 33.33
CDY35978 Canola mitochondrion, plastid 30.13 32.87
Zm00001d023734_P003 Maize nucleus, plastid 55.13 29.97
Zm00001d024675_P001 Maize mitochondrion 25.0 27.86
Zm00001d034768_P005 Maize nucleus 36.54 27.8
Zm00001d028661_P001 Maize plastid 27.56 25.9
Zm00001d022065_P001 Maize mitochondrion 48.72 24.68
Zm00001d026016_P002 Maize plastid 22.44 23.33
Zm00001d041949_P001 Maize mitochondrion 16.03 23.15
Zm00001d033511_P002 Maize cytosol, mitochondrion, nucleus 35.26 18.52
Zm00001d019041_P001 Maize extracellular, plasma membrane 34.62 18.43
Zm00001d013543_P009 Maize extracellular, mitochondrion, plasma membrane 34.62 17.36
Zm00001d007799_P001 Maize mitochondrion, plastid 34.62 14.06
Zm00001d017930_P003 Maize plastid 23.72 9.0
Protein Annotations
EntrezGene:100283778MapMan:16.12.5.2MapMan:16.7.2Gene3D:3.30.70.330ProteinID:AQK98711.1UniProt:B6SIF0
EMBL:BT085576EMBL:EU952515EMBL:EU952791EMBL:EU965915EMBL:EU970205GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PFscan:PS50102PANTHER:PTHR44202InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360
SUPFAM:SSF54928UniParc:UPI000182B163EnsemblPlantsGene:Zm00001d012052EnsemblPlants:Zm00001d012052_P001EnsemblPlants:Zm00001d012052_T001SEG:seg
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr8:-:167250646..167252718
Molecular Weight (calculated)
15765.3 Da
IEP (calculated)
7.506
GRAVY (calculated)
-0.346
Length
156 amino acids
Sequence
(BLAST)
001: MAAFNKLGGL LRHSALVSGI TGGSSPAVFN AARLMSTKLF IGGLDWGVDD VKLREAFSSF GEVTEARVIT DRETGRSRGF GFVNYSDSDA AKEAISAMDG
101: KEIDGRQVRV NMANERPAGN RGGGGYGGGG YGGGGYGGGG GYGGGGYGGG SQSYDA
Best Arabidopsis Sequence Match ( AT4G13850.2 )
(BLAST)
001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSYG GGGGGYGGGG GGYGGGGDGG GGF
Arabidopsis Description
RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.