Factsheet for Zm00001d017930_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30823	Sorghum	plastid	85.4	87.53
Os02t0730800-01	Rice	plastid	66.18	68.17
TraesCS6D01G273200.1	Wheat	plastid	64.48	67.95
TraesCS6B01G322400.1	Wheat	plastid	63.75	67.53
TraesCS6A01G292000.1	Wheat	plastid	63.26	67.01
GSMUA_Achr2P01230_001	Banana	nucleus	45.74	60.26
CDY19589	Canola	plastid	42.58	46.92
AT3G20930.2	Thale cress	plastid	43.07	46.7
KRG92035	Soybean	plastid	44.28	46.67
Bra031244.1-P	Field mustard	plastid	42.34	46.65
VIT_13s0106g00500.t01	Wine grape	plastid	45.99	46.21
Solyc11g007160.1.1	Tomato	plastid	43.55	44.75
CDY06395	Canola	nucleus	42.82	44.22
PGSC0003DMT400050134	Potato	plastid	42.58	43.75
Zm00001d041949_P001	Maize	mitochondrion	7.79	29.63
Zm00001d026016_P002	Maize	plastid	10.71	29.33
Zm00001d028661_P001	Maize	plastid	10.95	27.11
Zm00001d024675_P001	Maize	mitochondrion	9.0	26.43
Zm00001d041246_P001	Maize	nucleus	9.0	25.52
Zm00001d031168_P001	Maize	plastid	9.25	24.52
Zm00001d006566_P002	Maize	mitochondrion	6.81	24.35
Zm00001d012052_P001	Maize	mitochondrion, plastid	9.0	23.72
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	8.27	21.38
Zm00001d041750_P001	Maize	mitochondrion	9.98	15.71
Zm00001d034768_P005	Maize	nucleus	7.79	15.61
Zm00001d023734_P003	Maize	nucleus, plastid	10.22	14.63
Zm00001d022065_P001	Maize	mitochondrion	9.25	12.34
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	8.52	11.78
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	8.52	11.25
Zm00001d019041_P001	Maize	extracellular, plasma membrane	7.54	10.58
Zm00001d007799_P001	Maize	mitochondrion, plastid	7.3	7.81

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6HJ84	ProteinID:AQK74540.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0008452E82	EnsemblPlantsGene:Zm00001d017930	EnsemblPlants:Zm00001d017930_P003	EnsemblPlants:Zm00001d017930_T003	SEG:seg	:

Description

organelle RRM protein1organelle RRM protein1

Coordinates

chr5:+:210256398..210262442

Molecular Weight (calculated)

44696.9 Da

IEP (calculated)

6.411

GRAVY (calculated)

-0.250

Length

411 amino acids

Sequence
(BLAST)

001: MDTALPSVLI GGGLSVSVSI STATKAGSQS ISSHLSTSSL RLTARHRNRR RLPLLASSSE SPPAQLAAAS TESQSRSSRW VVVMDTPPAA AGGSGVSRAE
101: AVDYYAATLA QVVGSEKEAQ MRICEASWDG TYEFRCEIDE DASKELAKMP GVLSVQLDMG NKSEKDNHSL SLSTANLVSI SDGASTSSSG KNEFWLVRME
201: KPGVEVVTKA QMVDHYTQIL MKVLGNEQDA QVSIYHVSWD RDYGFCCHID EECAKELAGE QLGLSYPFMF LECYLFNPIR TLDQTTKITK IVSGDDGVKS
301: SEGTGAVDIK TKRLFVTGLS FYTSEKTLRA AFEPFGELVE VKIIMDRISK RSKGYAFVEY TTEEAGGAAL KAMNGQIING WMIVVDVAKT RSRDRLSGGS
401: NQAFRPHYQA R

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.