Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g007160.1.1 | Tomato | plastid | 93.5 | 93.5 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 50.25 | 64.42 |
| VIT_13s0106g00500.t01 | Wine grape | plastid | 59.75 | 58.44 |
| KRG92035 | Soybean | plastid | 56.5 | 57.95 |
| Bra031244.1-P | Field mustard | plastid | 49.25 | 52.81 |
| CDY19589 | Canola | plastid | 49.25 | 52.81 |
| AT3G20930.2 | Thale cress | plastid | 49.25 | 51.98 |
| CDY06395 | Canola | nucleus | 50.5 | 50.75 |
| TraesCS6D01G273200.1 | Wheat | plastid | 48.25 | 49.49 |
| TraesCS6B01G322400.1 | Wheat | plastid | 48.0 | 49.48 |
| TraesCS6A01G292000.1 | Wheat | plastid | 47.75 | 49.23 |
| Os02t0730800-01 | Rice | plastid | 47.25 | 47.37 |
| KXG30823 | Sorghum | plastid | 46.75 | 46.63 |
| Zm00001d017930_P003 | Maize | plastid | 43.75 | 42.58 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 12.25 | 37.98 |
| PGSC0003DMT400028726 | Potato | nucleus | 12.0 | 32.88 |
| PGSC0003DMT400022733 | Potato | plastid | 11.5 | 28.22 |
| PGSC0003DMT400049607 | Potato | plastid | 10.5 | 26.75 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 9.5 | 25.68 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 9.5 | 25.5 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 9.5 | 25.0 |
| PGSC0003DMT400001786 | Potato | nucleus | 4.25 | 24.29 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 8.5 | 23.45 |
| PGSC0003DMT400001879 | Potato | cytosol | 8.5 | 19.32 |
| PGSC0003DMT400084266 | Potato | extracellular | 7.75 | 19.25 |
| PGSC0003DMT400083014 | Potato | nucleus | 7.75 | 18.67 |
| PGSC0003DMT400084258 | Potato | nucleus | 7.75 | 18.67 |
| PGSC0003DMT400084290 | Potato | nucleus | 7.75 | 18.67 |
| PGSC0003DMT400076497 | Potato | nucleus | 8.75 | 17.07 |
| PGSC0003DMT400045627 | Potato | nucleus | 8.75 | 16.36 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 10.75 | 16.35 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 9.75 | 15.54 |
| PGSC0003DMT400003685 | Potato | nucleus | 8.25 | 10.89 |
| PGSC0003DMT400043581 | Potato | nucleus | 7.25 | 10.7 |
| PGSC0003DMT400079815 | Potato | nucleus | 6.75 | 8.49 |
Protein Annotations
| EntrezGene:102599113 | MapMan:16.12.5.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016554 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1BPU0 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400019468 |
| PGSC:PGSC0003DMG400019468 | EnsemblPlants:PGSC0003DMT400050134 | PFscan:PS50102 | PANTHER:PTHR31346 | PANTHER:PTHR31346:SF9 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002959FE1 | RefSeq:XP_006361451.1 | SEG:seg |
Description
RNA recognition motif-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019468]
Coordinates
chr11:-:5160069..5165210
Molecular Weight (calculated)
43945.9 Da
IEP (calculated)
5.036
GRAVY (calculated)
-0.268
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVTLLHSSS SSLSIIPTLS AKTLKTHFKF TLNLPNKSSK NLYSSKFCCT FVISRNRATS ITASSSSITS ISPSLPNSTT TQSHWMVLME TPPNGVSSKT
101: EVIDYYVETL ERVLGSEEDA QMCIYNASCN PPYGFCCDID DAVADEIAGM PRVLSVIPDP DFESMVKDYS YTNGQLSSPS TSYTEGSSLF PAGTSKHWLV
201: RMARPSVGVI RKGPVVDYYV QVLTKVLGNE KDAQMCLYHV SWQSNYGFCC ELDEVCVQEL AGVPGVLSVQ PDENFDSDDK DYGGGNLKLS EDSQESTASN
301: EETDVRTKKL FVTGLSFYTS EKTLRAAFEG YGELVEVKII MDKISKRSKG YAFIEYTTLE AASAALKEMN GKIINGWMIT VDVAKTNPPK YSRGRPGATR
101: EVIDYYVETL ERVLGSEEDA QMCIYNASCN PPYGFCCDID DAVADEIAGM PRVLSVIPDP DFESMVKDYS YTNGQLSSPS TSYTEGSSLF PAGTSKHWLV
201: RMARPSVGVI RKGPVVDYYV QVLTKVLGNE KDAQMCLYHV SWQSNYGFCC ELDEVCVQEL AGVPGVLSVQ PDENFDSDDK DYGGGNLKLS EDSQESTASN
301: EETDVRTKKL FVTGLSFYTS EKTLRAAFEG YGELVEVKII MDKISKRSKG YAFIEYTTLE AASAALKEMN GKIINGWMIT VDVAKTNPPK YSRGRPGATR
001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.