Factsheet for AT3G20930.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19589	Canola	plastid	80.21	81.5
Bra031244.1-P	Field mustard	plastid	80.21	81.5
CDY06395	Canola	nucleus	82.59	78.64
GSMUA_Achr2P01230_001	Banana	nucleus	48.81	59.29
KRG92035	Soybean	plastid	55.94	54.36
VIT_13s0106g00500.t01	Wine grape	plastid	54.35	50.37
Solyc11g007160.1.1	Tomato	plastid	52.24	49.5
PGSC0003DMT400050134	Potato	plastid	51.98	49.25
TraesCS6B01G322400.1	Wheat	plastid	48.81	47.68
TraesCS6A01G292000.1	Wheat	plastid	48.55	47.42
TraesCS6D01G273200.1	Wheat	plastid	48.55	47.18
KXG30823	Sorghum	plastid	49.34	46.63
Os02t0730800-01	Rice	plastid	48.02	45.61
Zm00001d017930_P003	Maize	plastid	46.7	43.07
AT3G46020.1	Thale cress	mitochondrion	9.23	34.31
AT5G59865.1	Thale cress	mitochondrion, plastid	9.5	31.86
AT5G06210.1	Thale cress	mitochondrion	11.61	30.14
AT4G13860.1	Thale cress	cytosol	6.6	28.74
AT2G27330.1	Thale cress	mitochondrion	8.71	28.45
AT3G23830.1	Thale cress	mitochondrion, plastid	10.03	27.94
AT3G08000.1	Thale cress	plastid	10.03	26.57
AT5G54580.1	Thale cress	mitochondrion, plastid	10.82	26.28
AT4G13850.1	Thale cress	mitochondrion	10.82	25.95
AT2G37510.2	Thale cress	mitochondrion, plastid	11.35	25.75
AT1G73530.1	Thale cress	plastid	12.14	25.41
AT5G59860.1	Thale cress	nucleus	9.5	22.93
AT1G18630.1	Thale cress	mitochondrion	7.92	19.35
AT4G39260.1	Thale cress	nucleus	8.18	18.34
AT2G21660.1	Thale cress	nucleus	7.92	17.05
AT3G26420.1	Thale cress	nucleus	9.76	15.1
AT1G74230.1	Thale cress	mitochondrion, plastid	9.76	12.8
AT5G61030.1	Thale cress	mitochondrion	8.44	10.36
AT1G60650.2	Thale cress	nucleus	6.6	8.56
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	6.6	8.06

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EntrezGene:821642	UniProt:A0A1I9LPX6	ProteinID:ANM64634.1	ArrayExpress:AT3G20930
EnsemblPlantsGene:AT3G20930	RefSeq:AT3G20930	TAIR:AT3G20930	RefSeq:AT3G20930-TAIR-G	EnsemblPlants:AT3G20930.2	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016554	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_001326648.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008488951	SEG:seg	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]

Coordinates

chr3:+:7331713..7334034

Molecular Weight (calculated)

42123.7 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.236

Length

379 amino acids

Sequence
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE EHSSAVKIIM DKISKRSKGY AFLEYTTEEA AGTALKEMNG KIINGWMIVV DVAKTKPFRQ NRSQPSFGL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.