Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- golgi 2
- extracellular 2
- plastid 1
- mitochondrion 6
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31170 | Canola | mitochondrion, nucleus | 81.9 | 71.97 |
| Bra000516.1-P | Field mustard | mitochondrion | 81.03 | 70.15 |
| CDX83260 | Canola | mitochondrion | 81.03 | 70.15 |
| VIT_06s0080g00870.t01 | Wine grape | plastid | 44.83 | 46.85 |
| KRH77758 | Soybean | mitochondrion | 36.21 | 37.17 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 31.03 | 37.11 |
| EES10764 | Sorghum | mitochondrion | 39.66 | 34.07 |
| Os04t0414300-00 | Rice | mitochondrion | 39.66 | 33.58 |
| AT3G46020.1 | Thale cress | mitochondrion | 29.31 | 33.33 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 38.79 | 32.37 |
| TraesCS2B01G312500.1 | Wheat | mitochondrion | 38.79 | 32.37 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 38.79 | 32.37 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 37.93 | 32.35 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 37.07 | 30.94 |
| AT5G06210.1 | Thale cress | mitochondrion | 38.79 | 30.82 |
| AT4G13860.1 | Thale cress | cytosol | 20.69 | 27.59 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 23.28 | 23.89 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 31.9 | 22.16 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 25.0 | 21.32 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 26.72 | 19.87 |
| AT3G08000.1 | Thale cress | plastid | 24.14 | 19.58 |
| AT1G73530.1 | Thale cress | plastid | 30.17 | 19.34 |
| AT5G59860.1 | Thale cress | nucleus | 25.0 | 18.47 |
| AT1G18630.1 | Thale cress | mitochondrion | 24.14 | 18.06 |
| AT4G39260.1 | Thale cress | nucleus | 23.28 | 15.98 |
| AT4G13850.1 | Thale cress | mitochondrion | 21.55 | 15.82 |
| AT2G21660.1 | Thale cress | nucleus | 21.55 | 14.2 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 31.9 | 12.8 |
| AT5G61030.1 | Thale cress | mitochondrion | 31.9 | 11.97 |
| AT3G26420.1 | Thale cress | nucleus | 21.55 | 10.2 |
| AT3G20930.2 | Thale cress | plastid | 28.45 | 8.71 |
| AT1G60650.2 | Thale cress | nucleus | 18.1 | 7.19 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 17.24 | 6.45 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:817276 | UniProt:A0A178VUQ5 | ProteinID:AEC07974.1 | ArrayExpress:AT2G27330 |
| EnsemblPlantsGene:AT2G27330 | RefSeq:AT2G27330 | TAIR:AT2G27330 | RefSeq:AT2G27330-TAIR-G | EnsemblPlants:AT2G27330.1 | TAIR:AT2G27330.1 |
| EMBL:BT025704 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_565646.2 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP09548.1 | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS50102 | PANTHER:PTHR45502 | PANTHER:PTHR45502:SF2 | UniProt:Q1ECN0 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0000196CBC | SEG:seg |
Description
At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0]
Coordinates
chr2:-:11695032..11696799
Molecular Weight (calculated)
12911.4 Da
IEP (calculated)
9.097
GRAVY (calculated)
-0.188
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS
101: KHNPPDTKPN HAGGDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.