CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27330.1	EES01073	AT2G42580.1	19000166
AT2G27330.1	EES02247	AT2G42580.1	19000166
AT2G27330.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0414300-00	Rice	mitochondrion	75.56	74.45
TraesCS2D01G294000.1	Wheat	mitochondrion	76.3	74.1
TraesCS2B01G312500.1	Wheat	mitochondrion	75.56	73.38
TraesCS2A01G296100.1	Wheat	mitochondrion	75.56	73.38
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	61.48	61.03
KRH67959	Soybean	mitochondrion	53.33	55.38
PGSC0003DMT400072597	Potato	mitochondrion	51.11	53.49
VIT_08s0007g02860.t01	Wine grape	mitochondrion	52.59	53.38
Solyc10g083240.1.1	Tomato	mitochondrion	50.37	52.71
Bra028739.1-P	Field mustard	mitochondrion	51.11	47.26
CDY04982	Canola	mitochondrion	50.37	46.58
GSMUA_Achr6P35640_001	Banana	nucleus	47.41	46.04
CDY14089	Canola	mitochondrion	49.63	45.89
AT5G06210.1	Thale cress	mitochondrion	48.15	44.52
VIT_06s0080g00870.t01	Wine grape	plastid	34.07	41.44
KRH77758	Soybean	mitochondrion	34.07	40.71
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	28.89	40.21
AT2G27330.1	Thale cress	mitochondrion	34.07	39.66
KXG36665	Sorghum	mitochondrion	28.15	36.19
CDY31170	Canola	mitochondrion, nucleus	33.33	34.09
EER97356	Sorghum	plastid	32.59	33.59
Bra000516.1-P	Field mustard	mitochondrion	32.59	32.84
CDX83260	Canola	mitochondrion	32.59	32.84
EES14515	Sorghum	plastid	33.33	32.14
EES01954	Sorghum	plastid	34.81	31.97
EER92461	Sorghum	plastid	37.78	30.18
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	13.33	27.69
KXG26990	Sorghum	plastid	29.63	27.21
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	13.33	26.87
EES02151	Sorghum	mitochondrion, plastid	26.67	24.66
EES16438	Sorghum	nucleus	27.41	22.42
KXG37870	Sorghum	nucleus	26.67	21.18
KXG37189	Sorghum	nucleus	29.63	20.1
KXG24163	Sorghum	nucleus	28.15	17.43
EES16016	Sorghum	mitochondrion	31.11	16.8
KXG36643	Sorghum	mitochondrion	34.81	14.87
OQU88590	Sorghum	nucleus	27.41	12.29
KXG37841	Sorghum	nucleus	25.19	10.76
KXG30823	Sorghum	plastid	26.67	8.98

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8075292	UniProt:C5YFZ4	EnsemblPlants:EES10764	ProteinID:EES10764
ProteinID:EES10764.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	PANTHER:PTHR45502:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3006G073300	SUPFAM:SSF54928	unigene:Sbi.13005
UniParc:UPI0001A86F40	RefSeq:XP_002446436.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:43582949..43585937

Molecular Weight (calculated)

14403.3 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.181

Length

135 amino acids

Sequence
(BLAST)

001: MAMAALREAS RCLASRGSPA AARSMLLAQS RGITYKLFVG GLSQFATEES LAEAFSRYGQ VIEATVVRDK VTDIPKGFGF VKFASPEEAN NAREEMNGKA
101: LNGRVIYVDI AKAKPDRATD ALPIARGPPK PISNG

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.