CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026016_P002	Maize	plastid	85.71	84.0
CDX82066	Canola	cytosol, nucleus, plastid	39.46	60.42
Solyc09g011210.2.1	Tomato	plastid	42.18	46.97
Os04t0583800-01	Rice	plastid	37.41	46.61
Bra008100.1-P	Field mustard	cytosol	25.17	45.12
VIT_17s0053g00760.t01	Wine grape	plastid	46.26	42.77
GSMUA_Achr5P15860_001	Banana	plastid	48.98	42.35
KRH09475	Soybean	plastid	48.3	39.44
PGSC0003DMT400022733	Potato	plastid	43.54	39.26
AT1G73530.1	Thale cress	plastid	44.22	35.91
EER97356	Sorghum	plastid	31.29	35.11
KRH38934	Soybean	plastid	34.69	33.12
KXG36665	Sorghum	mitochondrion	22.45	31.43
EES14515	Sorghum	plastid	29.93	31.43
EES10764	Sorghum	mitochondrion	27.21	29.63
EER92461	Sorghum	plastid	33.33	28.99
EES01954	Sorghum	plastid	25.85	25.85
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	44.9	25.68
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	10.88	24.62
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	10.2	22.39
EES16438	Sorghum	nucleus	23.81	21.21
KXG37870	Sorghum	nucleus	21.09	18.24
EES02151	Sorghum	mitochondrion, plastid	17.69	17.81
KXG37189	Sorghum	nucleus	23.81	17.59
KXG24163	Sorghum	nucleus	23.81	16.05
EES16016	Sorghum	mitochondrion	27.21	16.0
KXG36643	Sorghum	mitochondrion	25.17	11.71
KXG30823	Sorghum	plastid	30.61	11.22
OQU88590	Sorghum	nucleus	22.45	10.96
KXG37841	Sorghum	nucleus	21.09	9.81

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1B6PMW1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016554
GO:GO:1900871	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG26990	ProteinID:KXG26990	ProteinID:KXG26990.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3006G192000	SUPFAM:SSF54928	UniParc:UPI0003C6C32D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:54602764..54604098

Molecular Weight (calculated)

15914.0 Da

IEP (calculated)

9.908

GRAVY (calculated)

-0.167

Length

147 amino acids

Sequence
(BLAST)

001: MASAHASFAL TIAASRSFSF TIVPCPSPSP THRPAASSVG VRNQQRASTA MACLQQPSAS HDAATRLYVS GLSFRTTERS LRGAFEKFGD LTEVCLVMDR
101: VANRPRGFAF LSYTEEEEAR GAMEGMHGKF LDGRVIFVEV AKRRPGA

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.