Factsheet for VIT_17s0053g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82066	Canola	cytosol, nucleus, plastid	32.7	54.17
Solyc09g011210.2.1	Tomato	plastid	41.51	50.0
Zm00001d026016_P002	Maize	plastid	44.03	46.67
KXG26990	Sorghum	plastid	42.77	46.26
KRH09475	Soybean	plastid	50.94	45.0
GSMUA_Achr5P15860_001	Banana	plastid	46.54	43.53
PGSC0003DMT400022733	Potato	plastid	42.14	41.1
Bra008100.1-P	Field mustard	cytosol	20.13	39.02
KRH38934	Soybean	plastid	35.85	37.01
Os04t0583800-01	Rice	plastid	25.79	34.75
AT1G73530.1	Thale cress	plastid	38.99	34.25
VIT_06s0080g00870.t01	Wine grape	plastid	22.01	31.53
VIT_08s0040g03330.t01	Wine grape	plastid	26.42	30.0
VIT_08s0007g02860.t01	Wine grape	mitochondrion	24.53	29.32
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	42.77	26.46
VIT_06s0004g04260.t01	Wine grape	mitochondrion	17.61	26.42
VIT_19s0014g04770.t01	Wine grape	mitochondrion	22.01	25.93
VIT_12s0059g01210.t01	Wine grape	mitochondrion	19.5	22.14
VIT_08s0007g00070.t01	Wine grape	mitochondrion	17.61	21.05
VIT_05s0094g00380.t01	Wine grape	mitochondrion	12.58	18.18
VIT_03s0063g02610.t01	Wine grape	nucleus	17.61	17.28
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	15.09	15.79
VIT_13s0106g00500.t01	Wine grape	plastid	28.93	11.25
VIT_18s0166g00180.t01	Wine grape	mitochondrion	18.87	10.53
VIT_17s0000g07330.t01	Wine grape	plastid	18.24	10.47
VIT_08s0007g04870.t01	Wine grape	cytosol	15.72	10.08
VIT_13s0019g05080.t01	Wine grape	nucleus	16.98	9.71

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB58811	ProteinID:CCB58811.1	UniProt:F6HVU8	EMBL:FN596258
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016554	GO:GO:1900871	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGR:TC57588	UniParc:UPI000210A1B8	ArrayExpress:VIT_17s0053g00760	EnsemblPlantsGene:VIT_17s0053g00760
EnsemblPlants:VIT_17s0053g00760.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:16178863..16192782

Molecular Weight (calculated)

17798.4 Da

IEP (calculated)

9.222

GRAVY (calculated)

-0.328

Length

159 amino acids

Sequence
(BLAST)

001: MEAAALIICL PISSSPFSTQ TYKRKTLYPI SLHHPPHLRT CSAPSLSSWG PFNRPRNGND LFAVACLPSS PNQPSIPKTR LYVSGLSFRT TEESLRNAFE
101: TFGQLVEVNL VMDKIANRPR GFAFLRYSTE EESEKAIEGM HGKISTMVEW PTPKSLKEL

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.