Factsheet for VIT_05s0094g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G59865.1	Thale cress	mitochondrion, plastid	48.18	46.9
GSMUA_Achr2P19090_001	Banana	mitochondrion	43.64	45.28
Os01t0974701-01	Rice	mitochondrion	45.45	43.1
Zm00001d041949_P001	Maize	mitochondrion	40.0	40.74
TraesCS3D01G539400.1	Wheat	mitochondrion	40.0	40.37
TraesCS3A01G534200.1	Wheat	mitochondrion	40.0	40.37
TraesCS3B01G610900.1	Wheat	mitochondrion	39.09	39.45
TraesCS1A01G405700.1	Wheat	mitochondrion	39.09	38.74
CDY31588	Canola	nucleus	27.27	38.46
KRH24829	Soybean	mitochondrion	50.0	37.67
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	48.18	35.57
KRH24832	Soybean	endoplasmic reticulum	45.45	35.46
HORVU3Hr1G116710.1	Barley	mitochondrion	39.09	35.25
CDX71070	Canola	mitochondrion	47.27	34.21
EES02151	Sorghum	mitochondrion, plastid	42.73	32.19
VIT_06s0080g00870.t01	Wine grape	plastid	30.0	29.73
VIT_08s0007g02860.t01	Wine grape	mitochondrion	35.45	29.32
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	35.45	25.66
Bra025674.1-P	Field mustard	mitochondrion	31.82	24.14
VIT_06s0004g04260.t01	Wine grape	mitochondrion	22.73	23.58
KRH40931	Soybean	mitochondrion	48.18	22.94
VIT_08s0040g03330.t01	Wine grape	plastid	29.09	22.86
VIT_12s0059g01210.t01	Wine grape	mitochondrion	28.18	22.14
VIT_19s0014g04770.t01	Wine grape	mitochondrion	26.36	21.48
VIT_03s0063g02610.t01	Wine grape	nucleus	27.27	18.52
VIT_08s0007g00070.t01	Wine grape	mitochondrion	21.82	18.05
Solyc10g081180.1.1	Tomato	nucleus	30.0	15.0
VIT_17s0000g07330.t01	Wine grape	plastid	36.36	14.44
Bra008020.1-P	Field mustard	endoplasmic reticulum	25.45	13.46
VIT_17s0053g00760.t01	Wine grape	plastid	18.18	12.58
Bra008142.1-P	Field mustard	mitochondrion	30.0	12.5
Bra015926.1-P	Field mustard	mitochondrion	30.0	11.58
VIT_18s0166g00180.t01	Wine grape	mitochondrion	29.09	11.23
VIT_08s0007g04870.t01	Wine grape	cytosol	23.64	10.48
VIT_13s0106g00500.t01	Wine grape	plastid	34.55	9.29
VIT_13s0019g05080.t01	Wine grape	nucleus	20.91	8.27

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CCB49373	ProteinID:CCB49373.1	UniProt:F6HAW9	EMBL:FN595507
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002109289	ArrayExpress:VIT_05s0094g00380	EnsemblPlantsGene:VIT_05s0094g00380	EnsemblPlants:VIT_05s0094g00380.t01

Description

No Description!

Coordinates

chr5:-:23691565..23695945

Molecular Weight (calculated)

12311.6 Da

IEP (calculated)

7.290

GRAVY (calculated)

-0.398

Length

110 amino acids

Sequence
(BLAST)

001: MQSLNRFRCL SPASPCFRWL VSRGSCRKLF IGDAGLSYDT NETILKDAFG QYGEIIEVKV ICDHVSGKSK GYGFVQFTSD DDAHIALKEM DGQGGPSRNK
101: LENRIQDQVF

Best Arabidopsis Sequence Match ( AT5G59865.1 )
(BLAST)

001: MFSSLFVRCN SITSPLRCFA IRGSCSKLFV GGLSYDTNEP VLKNEFEKYG EIIEVKVICD HKSGKSKGYG FVLFDSEEAA ASALASMDNQ LLEGRNIRVE
101: YAQPKRSLYQ NPK

Arabidopsis Description

Glycine-rich RNA-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BEY1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.