Factsheet for VIT_08s0007g04870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g05080.t01	Wine grape	nucleus	56.85	50.72
GSMUA_Achr4P22370_001	Banana	nucleus	54.03	43.09
GSMUA_Achr2P12550_001	Banana	nucleus	38.31	42.41
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	50.4	42.09
TraesCS2A01G237400.1	Wheat	nucleus	47.98	40.61
TraesCS2B01G259400.1	Wheat	nucleus	47.98	40.61
Zm00001d019041_P001	Maize	extracellular, plasma membrane	47.98	40.61
TraesCS2D01G238900.1	Wheat	nucleus	47.58	40.27
OQU88590	Sorghum	nucleus	48.79	40.2
KXG37841	Sorghum	nucleus	51.21	40.19
VIT_03s0063g02610.t01	Wine grape	nucleus	26.21	40.12
TraesCS4D01G023800.2	Wheat	nucleus	50.4	39.31
TraesCS4A01G288500.1	Wheat	nucleus	50.0	39.12
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	48.79	38.91
TraesCS4B01G026400.1	Wheat	nucleus	50.0	38.87
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	53.63	38.55
Os03t0681900-01	Rice	nucleus	47.18	37.99
VIT_18s0166g00180.t01	Wine grape	mitochondrion	35.08	30.53
Zm00001d007799_P001	Maize	mitochondrion, plastid	45.16	29.17
VIT_08s0007g02860.t01	Wine grape	mitochondrion	14.52	27.07
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	16.53	26.97
VIT_06s0004g04260.t01	Wine grape	mitochondrion	11.29	26.42
VIT_06s0080g00870.t01	Wine grape	plastid	11.29	25.23
VIT_08s0040g03330.t01	Wine grape	plastid	14.11	25.0
VIT_05s0094g00380.t01	Wine grape	mitochondrion	10.48	23.64
VIT_19s0014g04770.t01	Wine grape	mitochondrion	12.5	22.96
VIT_12s0059g01210.t01	Wine grape	mitochondrion	12.9	22.86
VIT_17s0000g07330.t01	Wine grape	plastid	23.39	20.94
VIT_08s0007g00070.t01	Wine grape	mitochondrion	10.08	18.8
VIT_17s0053g00760.t01	Wine grape	plastid	10.08	15.72
VIT_13s0106g00500.t01	Wine grape	plastid	12.5	7.58

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	ProteinID:CCB55345	ProteinID:CCB55345.1	UniProt:F6HKC3
EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993
PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI0002109653	ArrayExpress:VIT_08s0007g04870	EnsemblPlantsGene:VIT_08s0007g04870	EnsemblPlants:VIT_08s0007g04870.t01	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:18818834..18823152

Molecular Weight (calculated)

27246.6 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.926

Length

248 amino acids

Sequence
(BLAST)

001: MGGREENRIF VGGLGWNTSE RHLEDAFSRY GKILESLVMM ERDTGRPRGF GFITFADHRA MEDAIREMHG RELDGRVISV NKAQPKMGSE DSGYGYGRDH
101: MPSGRDHAPG GRDRMLGGRD SYRGVDKPVG RSDDCFKCGR PGHWARDCPS GDGVGSGGGR FSSHSKFGGG GGGGGGGRGD RFGGDRYDDH FDGGRYGGDR
201: ERTDSRDNRY GRDRYNNDRY QPGLLLLFFK TNSGCGINEC LEVIVVII

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.