Factsheet for VIT_06s0004g04260.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0502800-01	Rice	mitochondrion	36.79	73.58
KRH10291	Soybean	nucleus	45.28	64.86
KRH23034	Soybean	mitochondrion	50.0	61.63
KXG36665	Sorghum	mitochondrion	54.72	55.24
CDY09244	Canola	mitochondrion	51.89	52.88
Bra020279.1-P	Field mustard	mitochondrion	51.89	50.0
TraesCS4A01G100000.1	Wheat	mitochondrion	49.06	50.0
TraesCS4D01G205200.1	Wheat	mitochondrion	49.06	50.0
AT3G46020.1	Thale cress	mitochondrion	48.11	50.0
TraesCS4B01G204300.1	Wheat	mitochondrion	49.06	49.06
GSMUA_Achr6P34250_001	Banana	mitochondrion	50.0	48.18
VIT_06s0080g00870.t01	Wine grape	plastid	35.85	34.23
AT5G59860.1	Thale cress	nucleus	49.06	33.12
VIT_08s0007g02860.t01	Wine grape	mitochondrion	38.68	30.83
VIT_19s0014g04770.t01	Wine grape	mitochondrion	35.85	28.15
VIT_08s0040g03330.t01	Wine grape	plastid	36.79	27.86
VIT_08s0007g00070.t01	Wine grape	mitochondrion	31.13	24.81
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	33.96	23.68
VIT_12s0059g01210.t01	Wine grape	mitochondrion	31.13	23.57
VIT_05s0094g00380.t01	Wine grape	mitochondrion	23.58	22.73
VIT_03s0063g02610.t01	Wine grape	nucleus	29.25	19.14
VIT_17s0053g00760.t01	Wine grape	plastid	26.42	17.61
VIT_17s0000g07330.t01	Wine grape	plastid	31.13	11.91
VIT_08s0007g04870.t01	Wine grape	cytosol	26.42	11.29
VIT_18s0166g00180.t01	Wine grape	mitochondrion	27.36	10.18
VIT_13s0019g05080.t01	Wine grape	nucleus	26.42	10.07
VIT_13s0106g00500.t01	Wine grape	plastid	33.96	8.8

Protein Annotations

EntrezGene:100263981	wikigene:100263981	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CCB43597	ProteinID:CCB43597.1
UniProt:F6GV38	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100263981	wikigene:LOC100263981	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR15241	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002109CDD	ArrayExpress:VIT_06s0004g04260	EnsemblPlantsGene:VIT_06s0004g04260	EnsemblPlants:VIT_06s0004g04260.t01	unigene:Vvi.23015	RefSeq:XP_002284323
RefSeq:XP_002284323.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5219473..5221838

Molecular Weight (calculated)

11962.6 Da

IEP (calculated)

10.540

GRAVY (calculated)

-0.272

Length

106 amino acids

Sequence
(BLAST)

001: MKTAGNLLKP WFSARRFSSE IFVTRLSGYT TNEELIEMFS PFGVVTQARL IKDPKTQRPK GFGFVKFESE VDAEKALKAM NGRIVRGRLI FVEIAKTTRP
101: GEDATC

Best Arabidopsis Sequence Match ( AT3G46020.1 )
(BLAST)

001: MAKRISAQLF VSRLSAYTTD QSLRQLFSPF GQIKEARLIR DSETQRPKGF GFITFDSEDD ARKALKSLDG KIVDGRLIFV EVAKNAEEVR AGINSNKAED
101: RG

Arabidopsis Description

At3g46020 [Source:UniProtKB/TrEMBL;Acc:Q9LZT1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.