Factsheet for VIT_03s0063g02610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0225g00130.t01
VIT_03s0038g02830.t01
VIT_03s0063g02610.t01
VIT_04s0044g00580.t01
VIT_05s0020g02480.t01
VIT_05s0049g01770.t01
VIT_06s0004g00240.t01
VIT_06s0004g05180.t01
VIT_06s0009g03740.t01
VIT_07s0104g00610.t01
VIT_08s0007g00840.t01
VIT_10s0003g02930.t01
VIT_10s0003g03830.t01
VIT_13s0019g02050.t01
VIT_14s0068g00680.t01
VIT_15s0048g00370.t01
VIT_16s0013g00330.t01
VIT_16s0022g01440.t01
VIT_16s0039g00380.t01
VIT_17s0000g09370.t01
VIT_17s0000g10430.t01
VIT_18s0041g00430.t01
VIT_18s0122g00960.t01
VIT_19s0085g00380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G21660.1	VIT_17s0000g10430.t01	AT1G13440.1	23395902
AT2G21660.1	VIT_00s0225g00130.t01	AT1G23310.1	23395902
AT2G21660.1	VIT_18s0122g00960.t01	AT1G42970.1	23395902
AT2G21660.1	VIT_04s0044g00580.t01	AT1G49240.1	23395902
AT2G21660.1	VIT_18s0041g00430.t01	AT1G72150.1	23395902
AT2G21660.1	VIT_06s0009g03740.t01	AT2G13360.1	23395902
AT2G21660.1	VIT_03s0038g02830.t01	AT2G16950.1	14756317
AT2G21660.1	VIT_06s0004g05180.t01	AT2G39730.1	23395902
AT2G21660.1	VIT_08s0007g00840.t01	AT2G39730.1	23395902
AT2G21660.1	VIT_13s0019g02050.t01	AT2G39730.1	23395902
AT2G21660.1	VIT_17s0000g10430.t01	AT3G04120.1	23395902
AT2G21660.1	VIT_19s0085g00380.t01	AT3G12780.1	23395902
AT2G21660.1	VIT_06s0004g00240.t01	AT3G13470.1	23395902
AT2G21660.1	VIT_10s0003g03830.t01	AT3G14420.1	23395902
AT2G21660.1	VIT_14s0068g00680.t01	AT3G26650.1	23395902
AT2G21660.1	VIT_15s0048g00370.t01	AT3G60750.1	23395902
AT2G21660.1	VIT_16s0022g01440.t01	AT3G60750.1	23395902
AT2G21660.1	VIT_17s0000g09370.t01	AT4G20360.1	23395902
AT2G21660.1	VIT_03s0063g02610.t01	AT4G39260.1	23395902
AT2G21660.1	VIT_04s0044g00580.t01	AT5G09810.1	23395902
AT2G21660.1	VIT_05s0049g01770.t01	AT5G35620.1	23395902
AT2G21660.1	VIT_05s0020g02480.t01	AT5G35630.1	23395902
AT2G21660.1	VIT_07s0104g00610.t01	AT5G35630.1	23395902
AT2G21660.1	VIT_10s0003g02930.t01	AT5G46330.1	23395902
AT2G21660.1	VIT_16s0039g00380.t01	ATCG00330.1	23395902
AT2G21660.1	VIT_16s0013g00330.t01	ATCG00490.1	23395902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29453	Soybean	nucleus	70.37	81.43
KRH51528	Soybean	nucleus	88.89	79.12
KRH29451	Soybean	nucleus	82.72	78.36
Solyc10g051380.1.1	Tomato	nucleus	62.35	77.69
KRH29452	Soybean	nucleus	74.07	76.92
GSMUA_Achr7P27650_001	Banana	nucleus	62.35	75.94
KRH60842	Soybean	mitochondrion	86.42	75.68
GSMUA_Achr8P05200_001	Banana	cytosol	72.22	75.48
CDY46213	Canola	nucleus	56.17	74.59
Solyc10g051390.1.1	Tomato	nucleus	54.32	74.58
CDY41969	Canola	cytosol	58.64	74.22
PGSC0003DMT400084258	Potato	nucleus	75.31	73.49
PGSC0003DMT400083014	Potato	nucleus	75.31	73.49
PGSC0003DMT400084290	Potato	nucleus	75.31	73.49
GSMUA_Achr4P14550_001	Banana	nucleus	71.6	73.42
Bra030284.1-P	Field mustard	nucleus	75.93	73.21
CDY15876	Canola	nucleus	75.93	72.78
Bra031210.1-P	Field mustard	nucleus	74.69	72.02
CDY70933	Canola	nucleus	74.69	72.02
Zm00001d041246_P001	Maize	nucleus	64.2	71.72
Bra001972.1-P	Field mustard	nucleus	72.22	71.34
CDY59763	Canola	nucleus	73.46	71.26
GSMUA_Achr3P30570_001	Banana	plasma membrane	74.69	71.18
KRH29454	Soybean	nucleus	74.69	71.18
PGSC0003DMT400001879	Potato	cytosol	77.16	71.02
Os12t0632000-01	Rice	nucleus	70.99	70.99
Solyc01g109660.2.1	Tomato	extracellular	76.54	70.86
CDY72366	Canola	nucleus	74.69	70.76
CDY42616	Canola	cytosol	68.52	70.7
Bra011869.1-P	Field mustard	cytosol	69.75	69.75
Bra010693.1-P	Field mustard	nucleus	70.37	69.09
CDX90323	Canola	plastid	70.37	69.09
Zm00001d031168_P001	Maize	plastid	64.81	67.74
TraesCS6A01G216500.1	Wheat	nucleus	67.28	67.28
CDX71276	Canola	nucleus	70.99	66.86
TraesCS6B01G246400.1	Wheat	nucleus	66.67	66.67
EES16438	Sorghum	nucleus	67.9	66.67
AT2G21660.1	Thale cress	nucleus	72.22	66.48
TraesCS6D01G199100.1	Wheat	nucleus	63.58	66.45
TraesCS4B01G020300.1	Wheat	extracellular	66.67	66.26
TraesCS5B01G013200.1	Wheat	nucleus	67.9	65.87
PGSC0003DMT400084266	Potato	extracellular	65.43	65.84
AT4G39260.1	Thale cress	nucleus	68.52	65.68
TraesCS4A01G293000.1	Wheat	plastid	65.43	65.43
HORVU6Hr1G055440.1	Barley	nucleus	65.43	65.43
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	64.2	65.41
TraesCS4D01G018500.1	Wheat	nucleus	66.05	64.46
CDY12133	Canola	cytosol	62.35	63.92
TraesCS5D01G020900.1	Wheat	plastid	68.52	63.79
TraesCS5A01G015000.1	Wheat	nucleus	66.67	63.53
KXG37870	Sorghum	nucleus	66.05	62.94
HORVU5Hr1G002150.1	Barley	nucleus	55.56	52.02
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	31.48	51.52
Os03t0670700-01	Rice	nucleus	61.73	51.02
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	40.12	42.76
VIT_13s0019g05080.t01	Wine grape	nucleus	52.47	30.58
VIT_08s0040g03330.t01	Wine grape	plastid	25.93	30.0
VIT_06s0080g00870.t01	Wine grape	plastid	20.37	29.73
VIT_06s0004g04260.t01	Wine grape	mitochondrion	19.14	29.25
VIT_08s0007g02860.t01	Wine grape	mitochondrion	23.46	28.57
VIT_12s0059g01210.t01	Wine grape	mitochondrion	24.69	28.57
VIT_17s0000g07330.t01	Wine grape	plastid	46.91	27.44
VIT_05s0094g00380.t01	Wine grape	mitochondrion	18.52	27.27
VIT_18s0166g00180.t01	Wine grape	mitochondrion	46.3	26.32
VIT_08s0007g04870.t01	Wine grape	cytosol	40.12	26.21
VIT_19s0014g04770.t01	Wine grape	mitochondrion	20.37	24.44
VIT_08s0007g00070.t01	Wine grape	mitochondrion	17.28	21.05
VIT_17s0053g00760.t01	Wine grape	plastid	17.28	17.61
VIT_13s0106g00500.t01	Wine grape	plastid	19.14	7.58

Protein Annotations

EntrezGene:100853676	wikigene:100853676	MapMan:16.7.2	Gene3D:3.30.70.330	ProteinID:CCB56982	ProteinID:CCB56982.1
UniProt:F6HQM5	EMBL:FN596006	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100853676	wikigene:LOC100853676	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45429	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGR:TC66884	TIGR:TC68120	UniParc:UPI00015C9198	ArrayExpress:VIT_03s0063g02610	EnsemblPlantsGene:VIT_03s0063g02610	EnsemblPlants:VIT_03s0063g02610.t01
unigene:Vvi.15250	RefSeq:XP_003631658	RefSeq:XP_003631658.1	RefSeq:XP_003631659	RefSeq:XP_003631659.1	SEG:seg

Description

No Description!

Coordinates

chr3:+:5832926..5833945

Molecular Weight (calculated)

16330.4 Da

IEP (calculated)

6.745

GRAVY (calculated)

-0.865

Length

162 amino acids

Sequence
(BLAST)

001: MASAEIEYRC FVGGLAWATD DQSLERAFSQ FGEILESKII NDRETGRSRG FGFVTFSSEQ SMRDAIEGMN GQNLDGRNIT VNEAQSRGSG GGGGGGGGGG
101: GYRGGGGYGG GGRREGGYSR GGGGGYGGGG GGYGGGSRDR GYGDGGSRYS RSGGASDGNW RN

Best Arabidopsis Sequence Match ( AT2G21660.2 )
(BLAST)

001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW

Arabidopsis Description

RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.