Factsheet for VIT_03s0038g02830.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g02610.t01
VIT_05s0049g01660.t01
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	VIT_03s0063g02610.t01	AT2G21660.1	14756317
AT2G16950.1	VIT_05s0049g01660.t01	AT4G14300.1	14756317
AT2G16950.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90653	Soybean	cytosol	85.6	85.6
KRH36099	Soybean	cytosol	84.71	84.99
Solyc01g111780.2.1	Tomato	nucleus, plastid	80.47	81.01
VIT_18s0001g00910.t01	Wine grape	cytosol	79.02	79.82
GSMUA_Achr4P16360_001	Banana	cytosol	45.65	77.61
CDY02225	Canola	cytosol	74.67	75.85
Bra013038.1-P	Field mustard	cytosol	74.55	75.82
Bra002011.1-P	Field mustard	cytosol	74.33	75.6
CDY47482	Canola	cytosol	74.44	75.54
AT2G16950.1	Thale cress	cytosol	75.45	75.53
EES11709	Sorghum	cytosol	74.89	75.48
HORVU2Hr1G126610.7	Barley	cytosol	74.33	75.34
CDY31391	Canola	cytosol	74.11	75.28
Zm00001d002936_P010	Maize	cytosol	74.67	75.08
Bra037286.1-P	Field mustard	cytosol	74.67	74.75
TraesCS2D01G572700.1	Wheat	cytosol	74.78	74.69
Os04t0691500-01	Rice	cytosol, plasma membrane	63.95	74.61
TraesCS2B01G624100.1	Wheat	cytosol	74.67	74.58
TraesCS2A01G562500.1	Wheat	golgi	74.67	74.58
CDY26790	Canola	cytosol	9.82	74.58
CDX89768	Canola	cytosol	72.54	74.29
Zm00001d026696_P005	Maize	cytosol	73.1	73.6
CDY71774	Canola	cytosol	22.54	71.38
CDY26791	Canola	cytosol	9.93	69.53
CDY54431	Canola	cytosol	74.55	55.9
AT2G16960.1	Thale cress	cytosol	33.15	53.8
AT2G16953.1	Thale cress	cytosol	3.57	50.0
Bra010184.1-P	Field mustard	cytosol, mitochondrion	16.85	49.51
TraesCS2B01G426000.1	Wheat	cytosol	15.62	38.46
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	38.62	35.27
VIT_08s0058g00270.t01	Wine grape	cytosol	18.42	18.92
VIT_16s0098g01630.t01	Wine grape	plastid	18.75	17.68
VIT_10s0092g00320.t01	Wine grape	cytosol	0.56	12.2
Os04t0691600-02	Rice	plastid	1.23	7.59

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100250435	wikigene:100250435	MapMan:23.5.1.2.2	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CBI37828	ProteinID:CBI37828.3	UniProt:D7U509	EMBL:FN596508	GO:GO:0000060	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0006607	GO:GO:0006610	GO:GO:0006810
GO:GO:0006886	GO:GO:0008139	GO:GO:0008150	GO:GO:0008536	GO:GO:0008565	GO:GO:0016020
GO:GO:0031965	GO:GO:0034399	InterPro:HEAT	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N
EntrezGene:LOC100250435	wikigene:LOC100250435	PFAM:PF02985	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166
PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	SMART:SM00913	SUPFAM:SSF48371	TIGR:TC58070	UniParc:UPI0001BE5162
ArrayExpress:VIT_03s0038g02830	EnsemblPlantsGene:VIT_03s0038g02830	EnsemblPlants:VIT_03s0038g02830.t01	RefSeq:XP_002280484	RefSeq:XP_002280484.2	SEG:seg

Description

No Description!

Coordinates

chr3:+:1980660..2017904

Molecular Weight (calculated)

99672.0 Da

IEP (calculated)

4.677

GRAVY (calculated)

0.046

Length

896 amino acids

Sequence
(BLAST)

001: MAATASWQPQ EEGFNSICAL LQHQISPSSD KSQIWQQLQH FSHFPDFNNY LVFILARAEG QSVEVRQAAG LLLKNNLRTA FNSMTPAYQL YIKSELLPCL
101: GAADRHIRST AGTIITVLVQ LGGVSGWPEL LQTLANCLES NDLNHMEGAM DALSKICEDV PQVLDSDVPG LVEHPINLFL PKLFQFFQSP HASLRKLSLG
201: SVNQYIMLMP AALFASMDQY LQGLFVLAHD SAAEVRKLVC AAFVQLIEVN PSFLEPHLRN VIEYMLQVNK DSDDEVALEA CEFWSAYCDA QLPLENLREF
301: LPRLIPVLLS NMAYAEDDES LAEAEEDESL PDRDQDLKPR FHSSRFHGSD NAEDDDDDIV NIWNLRKCSA AGLDVLSNVF GDEILPTMMP IVQAKLSTTD
401: DETWKEREAA VLALGAVAEG CITGLYPHLS EIVTFIIPLL DDKFPLIRSI SCWTLSRFSR FVVQGIGHQK GSEQFDKVLR GLLRRILDTN KRVQEAACSA
501: FATLEEEAAE KLAPHLEIIL QHLMCAFGKY QRRNLRIVYD AIATLADAVG EKLNQPTYLD ILMPPLIAKW QQLSNSDKDI FPLLECFTSI AQALGTGFSQ
601: FAEPVFQRCI NIIQTQQLAK IDPASAGVQY DKEFIVCSLD LLSGLAEGLG SGIESLVAQS SLRDLLLQCC MDDDAPDVRQ SAFALLGDLA RVCPVHLHPR
701: LSDFLNVAAK QLNTSKLKET VSVANNACWA IGELAVKVHQ EVSPIVMTVI SCLVPILQHA EELNKSLIEN SAITLGRLAW VCPEIVSLHM EHFMQSWCTA
801: LSMIRDDIEK EDAFRGLCAM VRANPSGALS SLVYMCKAIA SWHEIRSEDL HNEVCQVLHG YKQMLRNGAW EQCMSALEPP VKDKLSKYQV LVGTII

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.