Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013038.1-P | Field mustard | cytosol | 99.32 | 99.43 |
| CDX89768 | Canola | cytosol | 94.9 | 95.66 |
| CDY31391 | Canola | cytosol | 93.88 | 93.88 |
| CDY47482 | Canola | cytosol | 92.86 | 92.75 |
| CDY26791 | Canola | cytosol | 13.04 | 89.84 |
| CDY71774 | Canola | cytosol | 28.34 | 88.34 |
| CDY26790 | Canola | cytosol | 11.11 | 83.05 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 75.85 | 74.67 |
| KRH36099 | Soybean | cytosol | 75.28 | 74.36 |
| KRG90653 | Soybean | cytosol | 75.28 | 74.11 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 73.81 | 73.15 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 69.39 | 69.23 |
| CDY54431 | Canola | cytosol | 93.31 | 68.87 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 59.86 | 68.75 |
| EES11709 | Sorghum | cytosol | 69.16 | 68.62 |
| TraesCS2A01G562500.1 | Wheat | golgi | 69.73 | 68.56 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 69.73 | 68.56 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 69.73 | 68.56 |
| Zm00001d002936_P010 | Maize | cytosol | 69.16 | 68.46 |
| Zm00001d026696_P005 | Maize | cytosol | 68.37 | 67.75 |
| GSMUA_Achr4P16360_001 | Banana | cytosol | 40.14 | 67.17 |
| AT2G16960.1 | Thale cress | cytosol | 38.89 | 62.14 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 15.19 | 36.81 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 35.83 | 32.21 |
| CDY35657 | Canola | cytosol | 18.37 | 18.66 |
| CDY14379 | Canola | cytosol | 18.37 | 18.66 |
| CDY53085 | Canola | cytosol | 18.37 | 18.56 |
| CDY44668 | Canola | cytosol | 18.37 | 18.56 |
| CDY28068 | Canola | cytosol | 8.62 | 15.7 |
| CDX99262 | Canola | cytosol | 7.82 | 15.07 |
| Os04t0691600-02 | Rice | plastid | 1.25 | 7.59 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | GO:A0A078EJI5 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlants:CDY02225 |
| ProteinID:CDY02225 | ProteinID:CDY02225.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSBRNA2T00113643001 | InterPro:HEAT | InterPro:IPR001494 |
| InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF02985 | PFAM:PF03810 | PFscan:PS50166 | PANTHER:PTHR10527 |
| PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 | UniParc:UPI0004EE97B6 | SEG:seg | : |
Description
BnaA03g39420D
Coordinates
chrLK031932:-:819098..825015
Molecular Weight (calculated)
98265.1 Da
IEP (calculated)
4.547
GRAVY (calculated)
-0.026
Length
882 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVWQPREDG LSEICALLEQ QISPSSAAVD KSQIWKQLEH FSQIPDFNNY LVFILVRAQG KSVEIRQAAG LLLKNNLKGG YSSMAQENRK YIKSELLPCL
101: GAVDRHIRTT VGTIISEIVN IDGVSGWLEL LPALVTCLDS NDLNHMDGAM DALSKICEDI PHVLDSEVPG LAETTPINIF LPRLFQQFFQ SPHASLRKLS
201: LGCVNQYVII MPAALYNSMD KYLQGLFVLA NDPVAEVRKL VCAAFVQLTE VLPSSIEPHL RNVMEYMLQV NKDPDEEVAL EACEFWSAYC DAQLPPDNLK
301: ELLPRLIPVL LSNMAYADDD ESLLDAEEDE SQPDRDQDLK PRFHTSRLHG SEYFDDDDDD SFNVWNLRKC SAAAIDVLSN VFGDEILPAL MPLIQAKIST
401: SGDETWKERE AAVLTLGAIA EGCFNGLYPH LSEANDKFPL IRSISCWTLS RFGKYLIQET GNPKGYEQFE KVLMGLLRRL LDTNKRVQEA ACSAFATVEE
501: DAAEELVPHL GVILQHLMCA FGKYQRRNLR IVYDAIGTLA DSVREELNKP AYLEILMPPL VAKWQQLSNS DKDLFPLLEC FTSISQALGV GFAPFAQPVF
601: QRCMDIIQLQ QLAKVDPASA GAQYDREFIV CSLDLLSGLA EGLGSGIESL ISQSNLRDVL LKCCMDETSD VRQSAFALMG DLARVFPAYL QPRLLEFLEI
701: ASQQLNANLS RENLSVANNA CWAIGELAVK VRQEVSPIVT NVVSSLGLIL QHGEAVNKSL VENSAITLGR LAWIRPDLVA PHMEHFMKPW CLALSMVRDD
801: IEKEESFRGL CAVVKVNPSG GVSSLVFICK AIASWDEIRS EDVKNEVSQV LNGYKHMLGN SWAECWSALE PPVKERLSRY QV
101: GAVDRHIRTT VGTIISEIVN IDGVSGWLEL LPALVTCLDS NDLNHMDGAM DALSKICEDI PHVLDSEVPG LAETTPINIF LPRLFQQFFQ SPHASLRKLS
201: LGCVNQYVII MPAALYNSMD KYLQGLFVLA NDPVAEVRKL VCAAFVQLTE VLPSSIEPHL RNVMEYMLQV NKDPDEEVAL EACEFWSAYC DAQLPPDNLK
301: ELLPRLIPVL LSNMAYADDD ESLLDAEEDE SQPDRDQDLK PRFHTSRLHG SEYFDDDDDD SFNVWNLRKC SAAAIDVLSN VFGDEILPAL MPLIQAKIST
401: SGDETWKERE AAVLTLGAIA EGCFNGLYPH LSEANDKFPL IRSISCWTLS RFGKYLIQET GNPKGYEQFE KVLMGLLRRL LDTNKRVQEA ACSAFATVEE
501: DAAEELVPHL GVILQHLMCA FGKYQRRNLR IVYDAIGTLA DSVREELNKP AYLEILMPPL VAKWQQLSNS DKDLFPLLEC FTSISQALGV GFAPFAQPVF
601: QRCMDIIQLQ QLAKVDPASA GAQYDREFIV CSLDLLSGLA EGLGSGIESL ISQSNLRDVL LKCCMDETSD VRQSAFALMG DLARVFPAYL QPRLLEFLEI
701: ASQQLNANLS RENLSVANNA CWAIGELAVK VRQEVSPIVT NVVSSLGLIL QHGEAVNKSL VENSAITLGR LAWIRPDLVA PHMEHFMKPW CLALSMVRDD
801: IEKEESFRGL CAVVKVNPSG GVSSLVFICK AIASWDEIRS EDVKNEVSQV LNGYKHMLGN SWAECWSALE PPVKERLSRY QV
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.