Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002936_P010 | Maize | cytosol | 97.19 | 96.97 |
| Zm00001d026696_P005 | Maize | cytosol | 95.73 | 95.62 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 89.31 | 89.82 |
| TraesCS2A01G562500.1 | Wheat | golgi | 90.33 | 89.52 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 90.21 | 89.41 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 90.21 | 89.41 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 77.17 | 89.32 |
| GSMUA_Achr8P34170_001 | Banana | cytosol | 77.28 | 77.1 |
| KRG90653 | Soybean | cytosol | 75.82 | 75.22 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 75.48 | 74.89 |
| KRH36099 | Soybean | cytosol | 74.47 | 74.13 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 73.68 | 73.6 |
| GSMUA_Achr4P16350_001 | Banana | cytosol | 25.42 | 72.9 |
| VIT_18s0001g00910.t01 | Wine grape | cytosol | 70.75 | 70.91 |
| AT2G16950.1 | Thale cress | cytosol | 70.3 | 69.83 |
| CDY47482 | Canola | cytosol | 69.18 | 69.65 |
| Bra002011.1-P | Field mustard | cytosol | 68.73 | 69.35 |
| Bra037286.1-P | Field mustard | cytosol | 69.74 | 69.27 |
| CDY31391 | Canola | cytosol | 68.62 | 69.16 |
| CDY02225 | Canola | cytosol | 68.62 | 69.16 |
| Bra013038.1-P | Field mustard | cytosol | 68.39 | 69.01 |
| CDX89768 | Canola | cytosol | 66.48 | 67.54 |
| CDY26790 | Canola | cytosol | 8.89 | 66.95 |
| CDY71774 | Canola | cytosol | 20.47 | 64.31 |
| CDY26791 | Canola | cytosol | 9.0 | 62.5 |
| AT2G16953.1 | Thale cress | cytosol | 3.94 | 54.69 |
| CDY54431 | Canola | cytosol | 69.4 | 51.63 |
| AT2G16960.1 | Thale cress | cytosol | 31.5 | 50.72 |
| Bra010184.1-P | Field mustard | cytosol, mitochondrion | 16.42 | 47.87 |
| EES19347 | Sorghum | cytosol | 19.46 | 19.89 |
| EES16185 | Sorghum | cytosol | 18.9 | 19.27 |
| EES13277 | Sorghum | cytosol | 15.3 | 18.55 |
| OQU83489 | Sorghum | nucleus | 0.67 | 18.18 |
| Os04t0691600-02 | Rice | plastid | 1.24 | 7.59 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | EntrezGene:8076521 | InterPro:ARM-like | InterPro:ARM-type_fold | UniProt:C5YB46 |
| EnsemblPlants:EES11709 | ProteinID:EES11709 | ProteinID:EES11709.1 | GO:GO:0000060 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005635 | GO:GO:0005737 | GO:GO:0006607 | GO:GO:0006610 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008139 | GO:GO:0008150 | GO:GO:0008536 | GO:GO:0008565 | GO:GO:0016020 | GO:GO:0031965 |
| GO:GO:0034399 | InterPro:HEAT | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF02985 |
| PFAM:PF03810 | PFAM:PF13513 | PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 | SMART:SM00913 |
| EnsemblPlantsGene:SORBI_3006G280000 | SUPFAM:SSF48371 | unigene:Sbi.1763 | UniParc:UPI0001A870E3 | RefSeq:XP_002447381.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:+:61006035..61017806
Molecular Weight (calculated)
98681.8 Da
IEP (calculated)
4.536
GRAVY (calculated)
0.034
Length
889 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPAIWQPQ EQGLHEICTL LEAHISPNSD QARIWQQLQQ YSQFPDFNNY LVFILARGEG KSIEVRQAAG LLLKNNLRTT FSSMPPPFQH YVKSELLPCI
101: GATNRAIRST VGTVISVLFQ IVRVAGWIEL FQALHKCLDS NDLDHMEGAM DAIYKICEDV PEELDVDVPG LSERPINVFM PRILQFFQSP HPTLRKLSLG
201: CVNQYIVVMP SALYMSMDQY IQGLFNLAKD ASADVRKLVC SAWVQLIEVR PSILEPHLKN VTELILQANK DSDDEVALEA CEFWSAYCDV SMPPEGLREF
301: LPRLIPTLLS NMVYADDDES LDDAEEDESF PDRDQDLKPR FHASRLHGSE TGDDDDDDAV NVWNLRKCSA AGLDVLSNVF GDSILPTLMP LIEQNLARTD
401: DDSWKERETA VLCLGAIAEG CISGLYPHLP QIVAFLIPLL DDKFPLIRSI TCWTLSRYSK FIVQSLDHPN GREQFDKILM GLLRRILDTN KRVQEAACSA
501: FATLEEEASE ELVPHLEVIL QHLMCAYGKY QRRNLRILYD ALGTLADAVG AELNQAKYLD IFMPPLITKW QQLSNSDKDL FPLLECFTSV AQALGPGFAQ
601: FAEPVFQRCI NLIQSQQLAK IDPTAAGAVY DREFIVCSLD LLSGLAEGLG AGIESLVAQS SLRDLLLQCC MDEAADVRQS ALALLGDLSR VCPIHLHPRL
701: QEFLTVAAKQ LNPQSVKDAV SVANNACWAI GELAIKIGKE ISPVVITVVS CLVPILKSPE GLNKSLIENS AITLGRLSWV CPDIVAPHME HFMQAWCSAL
801: CMIRDDFEKE DAFHGLCAMV AANPTGAAGS LAYICQACAS WTEIKSEGLH NEVCQILNGY KQLLGNGGWE QCMATLQPDV VQKLARYGV
101: GATNRAIRST VGTVISVLFQ IVRVAGWIEL FQALHKCLDS NDLDHMEGAM DAIYKICEDV PEELDVDVPG LSERPINVFM PRILQFFQSP HPTLRKLSLG
201: CVNQYIVVMP SALYMSMDQY IQGLFNLAKD ASADVRKLVC SAWVQLIEVR PSILEPHLKN VTELILQANK DSDDEVALEA CEFWSAYCDV SMPPEGLREF
301: LPRLIPTLLS NMVYADDDES LDDAEEDESF PDRDQDLKPR FHASRLHGSE TGDDDDDDAV NVWNLRKCSA AGLDVLSNVF GDSILPTLMP LIEQNLARTD
401: DDSWKERETA VLCLGAIAEG CISGLYPHLP QIVAFLIPLL DDKFPLIRSI TCWTLSRYSK FIVQSLDHPN GREQFDKILM GLLRRILDTN KRVQEAACSA
501: FATLEEEASE ELVPHLEVIL QHLMCAYGKY QRRNLRILYD ALGTLADAVG AELNQAKYLD IFMPPLITKW QQLSNSDKDL FPLLECFTSV AQALGPGFAQ
601: FAEPVFQRCI NLIQSQQLAK IDPTAAGAVY DREFIVCSLD LLSGLAEGLG AGIESLVAQS SLRDLLLQCC MDEAADVRQS ALALLGDLSR VCPIHLHPRL
701: QEFLTVAAKQ LNPQSVKDAV SVANNACWAI GELAIKIGKE ISPVVITVVS CLVPILKSPE GLNKSLIENS AITLGRLSWV CPDIVAPHME HFMQAWCSAL
801: CMIRDDFEKE DAFHGLCAMV AANPTGAAGS LAYICQACAS WTEIKSEGLH NEVCQILNGY KQLLGNGGWE QCMATLQPDV VQKLARYGV
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.