Factsheet for Bra010184.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
nucleus 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005544.1-P
Bra008327.1-P
Bra010432.1-P
Bra010757.1-P
Bra026415.1-P
Bra030284.1-P
Bra031210.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	Bra030284.1-P	AT2G21660.1	14756317
AT2G16950.1	Bra031210.1-P	AT2G21660.1	14756317
AT2G16950.1	Bra010757.1-P	AT4G14300.1	14756317
AT2G16950.1	Bra010432.1-P	AT4G26630.1	25387881
AT2G16950.1	Bra026415.1-P	AT4G26630.1	25387881
AT2G16950.1	Bra005544.1-P	AT5G27080.1	20706207
AT2G16950.1	Bra008327.1-P	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P16360_001	Banana	cytosol	36.39	21.06
Bra002011.1-P	Field mustard	cytosol	57.05	19.75
Bra013038.1-P	Field mustard	cytosol	57.05	19.75
AT2G16950.1	Thale cress	cytosol	57.38	19.55
Bra037286.1-P	Field mustard	cytosol	56.07	19.11
Os04t0691500-01	Rice	cytosol, plasma membrane	45.9	18.23
Solyc01g111780.2.1	Tomato	nucleus, plastid	49.18	16.85
VIT_03s0038g02830.t01	Wine grape	cytosol	49.51	16.85
KRH36099	Soybean	cytosol	48.85	16.69
KRG90653	Soybean	cytosol	48.85	16.63
EES11709	Sorghum	cytosol	47.87	16.42
Zm00001d002936_P010	Maize	cytosol	47.87	16.39
HORVU2Hr1G126610.7	Barley	cytosol	46.89	16.18
TraesCS2D01G572700.1	Wheat	cytosol	47.21	16.05
TraesCS2B01G624100.1	Wheat	cytosol	47.21	16.05
TraesCS2A01G562500.1	Wheat	golgi	47.21	16.05
Zm00001d026696_P005	Maize	cytosol	46.23	15.84
TraesCS2B01G426000.1	Wheat	cytosol	14.1	11.81
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	27.87	8.66
Bra029635.1-P	Field mustard	cytosol	4.59	5.67
Bra003054.1-P	Field mustard	cytosol	15.08	5.3
Bra029733.1-P	Field mustard	cytosol	14.75	5.16
CDY26791	Canola	cytosol	1.64	3.91
CDY26790	Canola	cytosol	0.66	1.69
Os04t0691600-02	Rice	plastid	0.66	1.38
AT2G16953.1	Thale cress	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra010184.1	EnsemblPlants:Bra010184.1-P	EnsemblPlantsGene:Bra010184	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	SEG:seg
SUPFAM:SSF48371	UniParc:UPI000253F7EA	UniProt:M4D135	MapMan:23.5.1.2.2	:	:

Description

AT2G16950 (E=3e-066) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter

Coordinates

chrA06:-:20653330..20654827

Molecular Weight (calculated)

34789.8 Da

IEP (calculated)

8.898

GRAVY (calculated)

-0.344

Length

305 amino acids

Sequence
(BLAST)

001: MFFRRRSPSP FVLSEPEKHE RRWYLCHYLN INSGRRNLYP RCFGVTQPPH RYTPATIFAA TSDLAEDRRG TPTSPGFEVA SPYSPTVSVK KKKKVFRSSQ
101: NGNGPKSGIP KPPKSLGSSR DIGCSHDQFY LNNDEFINSD FIVFFPSHSK HILLDAFSIW QETCNPKGYE QFEKVLMGLL RRLLDSNKRV QEAACSAFAT
201: VEEDAAEELV PHLGVILQHL MCPFGKYQRR NLRIVYDAIG TLADSVREEL NKPAYLEILM PALVAKWQQL SNSDKDLFPL LECFTSISQV CAICQGLLYY
301: IKRVI

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.