Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26791 | Canola | cytosol | 7.59 | 8.59 |
| AT2G16960.1 | Thale cress | cytosol | 5.52 | 1.45 |
| Zm00001d002936_P010 | Maize | cytosol | 8.28 | 1.35 |
| Bra013038.1-P | Field mustard | cytosol | 7.59 | 1.25 |
| CDY02225 | Canola | cytosol | 7.59 | 1.25 |
| CDY47482 | Canola | cytosol | 7.59 | 1.25 |
| EES11709 | Sorghum | cytosol | 7.59 | 1.24 |
| Zm00001d026696_P005 | Maize | cytosol | 7.59 | 1.24 |
| GSMUA_Achr8P34170_001 | Banana | cytosol | 7.59 | 1.23 |
| Bra037286.1-P | Field mustard | cytosol | 7.59 | 1.23 |
| AT2G16950.1 | Thale cress | cytosol | 7.59 | 1.23 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 7.59 | 1.23 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 7.59 | 1.23 |
| TraesCS2A01G562500.1 | Wheat | golgi | 7.59 | 1.23 |
| CDX89768 | Canola | cytosol | 6.9 | 1.14 |
| Bra002011.1-P | Field mustard | cytosol | 6.9 | 1.14 |
| CDY31391 | Canola | cytosol | 6.9 | 1.13 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 6.9 | 1.13 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 6.9 | 1.11 |
| KRH36099 | Soybean | cytosol | 6.21 | 1.01 |
| KRG90653 | Soybean | cytosol | 6.21 | 1.0 |
| VIT_18s0001g00910.t01 | Wine grape | cytosol | 5.52 | 0.9 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 5.52 | 0.9 |
| CDY26790 | Canola | cytosol | 0.69 | 0.85 |
| CDY54431 | Canola | cytosol | 6.9 | 0.84 |
| Os03t0294600-01 | Rice | cytosol | 2.07 | 0.81 |
| Os12t0568800-01 | Rice | plasma membrane | 3.45 | 0.71 |
| Bra010184.1-P | Field mustard | cytosol, mitochondrion | 1.38 | 0.66 |
| Os05t0353400-01 | Rice | cytosol, plasma membrane, plastid | 2.07 | 0.35 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 0.69 | 0.13 |
| GSMUA_Achr4P16350_001 | Banana | cytosol | 0.0 | 0.0 |
| CDY71774 | Canola | cytosol | 0.0 | 0.0 |
| AT2G16953.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.7.2.2.17 | Gene3D:2.40.50.140 | EMBL:AF095707 | ProteinID:BAF16274.1 | ProteinID:BAS91787.1 | ProteinID:CAE05776.2 |
| ProteinID:EEE61965.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022627 | HAMAP:MF_01345_B |
| InterPro:NA-bd_OB-fold | EnsemblPlantsGene:Os04g0691600 | EnsemblPlants:Os04t0691600-02 | PFAM:PD001295 | PFAM:PF00366 | PRINTS:PR00973 |
| PANTHER:PTHR10744 | PANTHER:PTHR10744:SF7 | UniProt:Q9ZST1 | InterPro:Ribosomal_S17 | InterPro:Ribosomal_S17/S11 | SUPFAM:SSF50249 |
| UniParc:UPI00001348BE | SEG:seg | : | : | : | : |
Description
RPS17Similar to 30S ribosomal protein S17. (Os04t0691600-01);Similar to 30S ribosomal protein S17. (Os04t0691600-02)
Coordinates
chr4:+:35381589..35382214
Molecular Weight (calculated)
15976.2 Da
IEP (calculated)
11.483
GRAVY (calculated)
-0.779
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLTTPFVSS PVRVQGNGGS GASPWAGAAT ALRIQAAKQL TGRVVTTKAD KTVGVEVVRL APHPKYKRRE RIKKKYQAHD PDNQFKVGDV VELRRSRPIS
101: KTKHFLAVPL PPRDTRRKSQ LLPPLQSQSQ SQDQDQPPTP PPSSD
101: KTKHFLAVPL PPRDTRRKSQ LLPPLQSQSQ SQDQDQPPTP PPSSD
001: MITSSLTSSL QALKLSSPFA HGSTPLSSLS KPNSFPNHRM PALVPVIRAM KTMQGRVVCA TSDKTVAVEV VRLAPHPKYK RRVRMKKKYQ AHDPDNQFKV
101: GDVVRLEKSR PISKTKSFVA LPVIARAARK AEAGGDELLG LPLESQQPA
101: GDVVRLEKSR PISKTKSFVA LPVIARAARK AEAGGDELLG LPLESQQPA
Arabidopsis Description
RPS1730S ribosomal protein S17, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P16180]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.