Factsheet for Zm00001d026696_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000168_P001
Zm00001d005562_P001
Zm00001d006622_P001
Zm00001d009154_P001
Zm00001d013568_P001
Zm00001d013757_P010
Zm00001d014058_P002
Zm00001d016034_P002
Zm00001d017725_P001
Zm00001d031168_P001
Zm00001d032739_P001
Zm00001d033159_P001
Zm00001d041246_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	Zm00001d013568_P001	AT2G21660.1	14756317
AT2G16950.1	Zm00001d031168_P001	AT2G21660.1	14756317
AT2G16950.1	Zm00001d041246_P001	AT2G21660.1	14756317
AT2G16950.1	Zm00001d014058_P002	AT4G14300.1	14756317
AT2G16950.1	Zm00001d032739_P001	AT4G14300.1	14756317
AT2G16950.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT2G16950.1	Zm00001d033159_P001	AT4G26630.1	25387881
AT2G16950.1	Zm00001d000168_P001	AT5G27080.1	20706207
AT2G16950.1	Zm00001d005562_P001	AT5G27080.1	20706207
AT2G16950.1	Zm00001d006622_P001	AT5G27080.1	20706207
AT2G16950.1	Zm00001d009154_P001	AT5G27080.1	20706207
AT2G16950.1	Zm00001d016034_P002	AT5G27080.1	20706207
AT2G16950.1	Zm00001d017725_P001	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11709	Sorghum	cytosol	95.62	95.73
Zm00001d002936_P010	Maize	cytosol	95.62	95.51
HORVU2Hr1G126610.7	Barley	cytosol	87.64	88.24
TraesCS2A01G562500.1	Wheat	golgi	88.76	88.07
TraesCS2B01G624100.1	Wheat	cytosol	88.65	87.96
TraesCS2D01G572700.1	Wheat	cytosol	88.65	87.96
Os04t0691500-01	Rice	cytosol, plasma membrane	75.28	87.24
GSMUA_Achr8P34170_001	Banana	cytosol	76.4	76.32
GSMUA_Achr4P16350_001	Banana	cytosol	25.62	73.55
VIT_03s0038g02830.t01	Wine grape	cytosol	73.6	73.1
KRG90653	Soybean	cytosol	73.6	73.1
KRH36099	Soybean	cytosol	72.36	72.12
Solyc01g111780.2.1	Tomato	nucleus, plastid	71.8	71.8
VIT_18s0001g00910.t01	Wine grape	cytosol	69.55	69.79
AT2G16950.1	Thale cress	cytosol	69.33	68.94
CDY47482	Canola	cytosol	67.98	68.52
CDY02225	Canola	cytosol	67.75	68.37
Bra002011.1-P	Field mustard	cytosol	67.64	68.33
Bra037286.1-P	Field mustard	cytosol	68.54	68.16
CDY31391	Canola	cytosol	67.42	68.03
Bra013038.1-P	Field mustard	cytosol	67.3	67.99
CDX89768	Canola	cytosol	65.39	66.51
CDY26790	Canola	cytosol	8.76	66.1
CDY71774	Canola	cytosol	20.11	63.25
CDY26791	Canola	cytosol	8.99	62.5
AT2G16953.1	Thale cress	cytosol	4.04	56.25
CDY54431	Canola	cytosol	68.09	50.71
AT2G16960.1	Thale cress	cytosol	30.79	49.64
Bra010184.1-P	Field mustard	cytosol, mitochondrion	15.84	46.23
Zm00001d038021_P001	Maize	plastid	19.66	19.91
Zm00001d010512_P001	Maize	plastid	19.55	19.86
Zm00001d041556_P002	Maize	cytosol	18.88	17.02
Zm00001d030694_P002	Maize	mitochondrion	18.76	15.55
Os04t0691600-02	Rice	plastid	1.24	7.59

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100273670	MapMan:23.5.1.2.2	UniProt:A0A1D6JIW5	ProteinID:AQK47497.1	ProteinID:AQK47499.1
ProteinID:AQK47501.1	ProteinID:AQK47502.1	ProteinID:AQK47507.1	ProteinID:AQK47511.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008536	InterPro:HEAT
InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	PFAM:PF02985	PFAM:PF03810	PFAM:PF13513
PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	SMART:SM00913	SUPFAM:SSF48371	UniParc:UPI0004DE8F68
EnsemblPlantsGene:Zm00001d026696	EnsemblPlants:Zm00001d026696_P005	EnsemblPlants:Zm00001d026696_T005	SEG:seg	:	:

Description

Transportin-1

Coordinates

chr10:+:150180000..150204009

Molecular Weight (calculated)

98870.0 Da

IEP (calculated)

4.622

GRAVY (calculated)

0.018

Length

890 amino acids

Sequence
(BLAST)

001: MAASALWQPQ EQGLREICAH LEAHISPNSD QARIWQQLQQ YSQFPDFNNY LLFILARGEG KSIEVRQAAG LLLKNNLRTT YISMQSSSQH YVKSELLPCI
101: GATNRAIRST VGTVISVLFQ IVRVAGWIEL FQALHKCLES NDLDHMEGAM DAIYKICEDV PEELDVDVPG LSERPINVFM PRILQFFQSP HASLRKLSLG
201: IINQYIVVMP SALYMSMDQY IQGLFNLAKD SSADVRKLVC SAWVQLIEVR PSILEPHLKN VTELILQANK DSDDEVALEA CEFWSAYCDV SMPPEGLQEF
301: LPHLIPTLLS NMVYADGDES LDDAEEDESF PDRDQDLKPR FHDSRLHGSE TGDDDDDADA VNVWNLRKCS AAGLDVLSNV FGDSILPTLM PLIEQNLART
401: DDDSWKERET AVLCLGAIAE GCISGLYPHL PQIVAFLIPL LDDKFPLIRS ITCWTLSRYS KFIVQSLDHP NGRGQFDKIL MGVLRRILDT NKRVQEAACS
501: AFAILEEEAS EELVPHLEVI LQHLMCAYRK YQRRNLRILY DALGTLADAV GAELNQAKYL DIFMPPLITK WQQLSNYDKD LFPLLECFTS IAQALGPGFA
601: QFAEPVFQRC INLIHSQQLS KIDPTAAGAV YDREFIVCSL DLLSGLAEGL GAGIESLVAQ SNLRDLLLQC CMDEAADVRQ SALALLGDLS RVCPIHLHPR
701: LQEFLTVAAK QLNPQSVKDA VSVANNACWA IGELAIKIGK EIAPVVITVV SCLVPILKSP EGSNKSLVEN SAITLGRLSW VCPDIVAPHM EHFMQAWCKA
801: LCMIRDDFEK EDSFHGLCAM VAANPTGGAG SLAYICQACA SWTEIKSEGL HNEVCQILNG YKQLLGNGGW EQCMATLQPD VVQKLARYGV

Best Arabidopsis Sequence Match ( AT2G16950.1 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAVIWQAL YNSLDKYLQG LFVLANDPVP EVRKLVCAAF VHLTEVLPSS IEPHLRNVME YMLQVNRDPD EEVSLEACEF WSAYCDAQLP
301: PENLKEFLPR LIPVLLENMA YADDDESLLD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPLIQ
401: KNLSASGDEA WKQREAAVLA LGAIAEGCMN GLYPHLSEIV AFLLPLLDDK FPLIRSISCW TLSRFGKYLI QESGNPKGYE QFEKVLMGLL RRLLDTNKRV
501: QEAACSAFAT VEEDAAEELV PHLGVILQHL MCAFGKYQRR NLRIVYDAIG TLADSVREEL NKPAYLEILM PPLVAKWQQL SNSDKDLFPL LECFTSISQA
601: LGVGFAPFAQ PVFQRCMDII QLQQLAKVNP ASAGAQYDRE FIVCSLDLLS GLAEGLGSGI ESLVQQSNLR DLLLNCCIDE AADVRQSAFA LMGDLARVFP
701: VYLQPRLLDF LEIASQQLSA NLNRENLSVA NNACWAIGEL AVKVRQEVSP IVAKVVSSLG LILQHGEGVN KALVENSAIT LGRLAWIRPD LVAPHMDHFM
801: KPWCMALSMV RDDIEKEDAF RGLCAVVKVN PSGGVSSLVF ICQAIASWHE IRSEDVQTEV SQVLNGYKHM LGNSWAECLS ALDPPVKERL ARYQV

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.