Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005562_P001 | Maize | plastid | 50.0 | 35.27 |
| TraesCS2D01G118700.1 | Wheat | cytosol | 40.41 | 28.1 |
| Zm00001d006622_P001 | Maize | golgi | 53.42 | 23.08 |
| KRH08491 | Soybean | cytosol | 17.12 | 17.86 |
| VIT_16s0039g02620.t01 | Wine grape | cytosol | 28.08 | 17.67 |
| Zm00001d017725_P001 | Maize | mitochondrion | 34.93 | 16.29 |
| Zm00001d016034_P002 | Maize | nucleus | 41.78 | 12.95 |
| Zm00001d000168_P001 | Maize | plastid | 41.78 | 12.79 |
| Bra037011.1-P | Field mustard | nucleus | 28.77 | 10.02 |
| PGSC0003DMT400001467 | Potato | nucleus | 30.82 | 9.93 |
| PGSC0003DMT400069533 | Potato | nucleus, plastid | 30.82 | 9.89 |
| Solyc06g072830.2.1 | Tomato | nucleus, plastid | 30.14 | 9.67 |
| VIT_15s0107g00320.t01 | Wine grape | nucleus | 29.45 | 9.56 |
| Solyc03g096870.2.1 | Tomato | nucleus | 29.45 | 9.49 |
| AT4G33270.1 | Thale cress | nucleus | 28.08 | 8.97 |
| AT4G33260.1 | Thale cress | nucleus | 27.4 | 8.95 |
| Bra005544.1-P | Field mustard | nucleus | 26.71 | 8.88 |
| VIT_16s0039g02510.t01 | Wine grape | nucleus | 27.4 | 8.87 |
| PGSC0003DMT400047585 | Potato | nucleus | 26.71 | 8.71 |
| Solyc08g005420.2.1 | Tomato | nucleus | 26.71 | 8.71 |
| AT5G27570.1 | Thale cress | nucleus | 26.71 | 8.67 |
| Bra034555.1-P | Field mustard | nucleus | 21.23 | 8.18 |
| AT5G27080.1 | Thale cress | nucleus | 24.66 | 8.14 |
| AT5G26900.1 | Thale cress | nucleus | 24.66 | 8.11 |
| VIT_05s0102g00640.t01 | Wine grape | nucleus | 21.92 | 7.75 |
| VIT_05s0029g01120.t01 | Wine grape | nucleus | 21.92 | 7.75 |
| VIT_05s0102g00680.t01 | Wine grape | nucleus | 21.92 | 7.71 |
| Bra008327.1-P | Field mustard | cytosol, mitochondrion | 22.6 | 7.71 |
| VIT_05s0102g00550.t01 | Wine grape | nucleus | 21.23 | 7.51 |
| Bra011430.1-P | Field mustard | cytosol | 29.45 | 6.01 |
| Zm00001d041957_P004 | Maize | plastid | 17.81 | 5.36 |
| Zm00001d027430_P001 | Maize | plastid | 16.44 | 4.67 |
| Zm00001d048472_P001 | Maize | nucleus, plastid | 16.44 | 4.62 |
| CDX98239 | Canola | nucleus | 4.11 | 4.48 |
| Zm00001d015555_P001 | Maize | cytosol | 1.37 | 2.63 |
| AT5G27945.1 | Thale cress | cytosol, plastid, vacuole | 7.53 | 2.57 |
| GSMUA_Achr2P19120_001 | Banana | cytosol | 4.11 | 2.25 |
Protein Annotations
| EnsemblPlants:Zm00001d009154_P001 | EnsemblPlants:Zm00001d009154_T001 | EnsemblPlantsGene:Zm00001d009154 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 |
| GO:GO:0051301 | GO:GO:0097027 | GO:GO:1904668 | InterPro:Cdc20/Fizzy | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF30 |
| ProteinID:AQK91425.1 | SEG:seg | UniParc:UPI00022096D9 | UniProt:A0A1D6FHZ4 | MapMan:35.2 | : |
Description
Cell division cycle 20.1 cofactor of APC complex
Coordinates
chr8:+:39905840..39907035
Molecular Weight (calculated)
16452.6 Da
IEP (calculated)
11.450
GRAVY (calculated)
0.218
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLGRGVMLC VLLFSSLWRL RARAYATISC VRSAALPVAA SWLRLRNTHV LLLMVVLFAL FLRKLSGARF IPDRSAMDMD MAHYLLTEPR KDKENVAGMV
101: ASPSKEAYRR LLAGKLFNNR TQILAFRNKL PEPENMSITN VASSNL
101: ASPSKEAYRR LLAGKLFNNR TQILAFRNKL PEPENMSITN VASSNL
001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
Arabidopsis Description
CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.