Factsheet for Zm00001d018349_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05938	Sorghum	cytosol	98.17	98.17
Zm00001d052056_P005	Maize	plasma membrane	97.8	97.8
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	96.51	96.51
HORVU1Hr1G052730.26	Barley	cytosol	66.24	93.04
TraesCS1D01G208500.1	Wheat	cytosol	84.4	92.37
TraesCS1A01G205200.1	Wheat	cytosol	91.38	91.38
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	91.01	91.01
TraesCS7A01G062100.1	Wheat	cytosol	90.46	90.46
TraesCS7D01G056800.1	Wheat	cytosol	90.46	90.46
TraesCS7A01G217200.1	Wheat	cytosol	90.28	90.28
TraesCS4A01G427500.1	Wheat	cytosol, unclear	90.09	90.09
TraesCS1B01G218800.1	Wheat	cytosol	77.98	90.04
VIT_15s0021g02230.t01	Wine grape	cytosol	89.36	89.19
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	88.62	88.62
KRH59103	Soybean	nucleus	88.62	88.62
TraesCS7D01G218500.2	Wheat	cytosol	90.64	86.51
AT3G20050.1	Thale cress	cytosol	86.06	86.06
CDY25374	Canola	cytosol	85.69	85.69
Solyc01g090750.2.1	Tomato	nucleus	85.69	85.69
CDY42227	Canola	cytosol	85.5	85.5
CDY24564	Canola	cytosol	85.5	85.5
PGSC0003DMT400066954	Potato	cytosol	85.32	85.32
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	42.57	84.67
CDX82264	Canola	cytosol	84.4	84.4
Bra001773.1-P	Field mustard	cytosol	84.4	84.25
CDY36063	Canola	cytosol	84.22	84.22
Bra035820.1-P	Field mustard	cytosol	85.5	83.81
CDY33444	Canola	cytosol	85.32	82.59
HORVU7Hr1G044070.2	Barley	cytosol	85.69	81.79
Bra038252.1-P	Field mustard	cytosol	85.5	61.24
Zm00001d040257_P001	Maize	cytosol	34.68	36.0
Zm00001d008369_P001	Maize	cytosol, nucleus	34.5	35.81
Zm00001d053857_P002	Maize	cytosol	34.86	33.93
Zm00001d027371_P001	Maize	plasma membrane	30.28	30.84
Zm00001d018694_P002	Maize	cytosol	31.01	30.84
Zm00001d007960_P001	Maize	cytosol	30.83	30.66
Zm00001d051742_P001	Maize	plastid	30.09	30.65
Zm00001d028183_P002	Maize	cytosol	28.99	28.32
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	27.52	27.37
Zm00001d007192_P001	Maize	cytosol	26.61	26.9
Zm00001d040688_P001	Maize	cytosol	13.76	26.69
Zm00001d007508_P005	Maize	cytosol	27.52	26.18
Zm00001d053553_P002	Maize	cytosol	28.99	24.23
Zm00001d052882_P001	Maize	plastid	17.8	19.13

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100272316	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1D6HN01
ProteinID:AQK75687.1	ProteinID:AQK75693.1	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340
UniParc:UPI000221E3C4	EnsemblPlantsGene:Zm00001d018349	EnsemblPlants:Zm00001d018349_P001	EnsemblPlants:Zm00001d018349_T001	SEG:seg	:

Description

T-complex protein 1 subunit alpha

Coordinates

chr5:+:219001909..219011492

Molecular Weight (calculated)

59269.7 Da

IEP (calculated)

6.108

GRAVY (calculated)

-0.088

Length

545 amino acids

Sequence
(BLAST)

001: MAITAPTPDI RGERQSGQDV RTQNVMACGA LSNIVKSSLG PVGLDKMLVD DIGDVTITND GATILKMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIIA
101: AELLKRANDL VKNKIHPTSI ISGYRLAMRE ACKYVEEKLA VKVDKLGKDS LINSAKTSMS SKLINSDSDF FATLVVEAVQ AVKITNAKGE VKYPIKSINI
201: LKAHGKSAKD SYLLNGYALN TGRAAQGMPT RVTPARIACL DFNLQKTKMQ LGVQVLVTDP RELEKIRQRE SDITKERIDK ILKSGANVVL TTKGIDDMSL
301: KYFVEAGAIA VRRVRKEDLR HVAKATGATM VSTFADMEGE ETFDSSFLGH ADEVVEERIA DDDVILVKGT KNTSAVSIIL RGANDFMLDE IDRSLHDALC
401: IVKRTLESNM VVAGGGAVEA ALSVYLENLA TTLGSREQLA IAEFAESLLI IPKVLSVNAA KDATELVAKL RAYHHTAQTK ADKQHYSSMG LDLSKGIIRN
501: NLEYGVIEPS MSKVKIIQFA TEAAITILRI DDMIKLTKEE GNEEE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.