Factsheet for Zm00001d028183_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92655	Sorghum	cytosol	98.92	98.92
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	97.13	97.13
TraesCS7A01G346200.1	Wheat	cytosol	93.37	93.37
HORVU7Hr1G080310.1	Barley	cytosol	93.37	93.37
TraesCS7B01G237000.1	Wheat	cytosol	93.55	92.39
TraesCS7D01G332900.1	Wheat	cytosol	93.37	92.21
GSMUA_Achr6P23290_001	Banana	cytosol	89.43	89.59
VIT_17s0000g08170.t01	Wine grape	cytosol	88.35	88.51
VIT_07s0130g00410.t01	Wine grape	cytosol	88.17	88.33
Bra001174.1-P	Field mustard	cytosol	86.92	87.39
CDX74120	Canola	cytosol	86.92	87.39
GSMUA_Achr5P09040_001	Banana	cytosol	87.1	87.25
PGSC0003DMT400060294	Potato	cytosol	86.74	87.21
AT5G26360.1	Thale cress	cytosol	86.56	87.03
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	86.38	87.0
KRH38791	Soybean	cytosol	86.38	87.0
Solyc05g056310.2.1	Tomato	extracellular, plastid	86.56	86.71
CDY18835	Canola	cytosol	86.2	86.67
Bra040242.1-P	Field mustard	cytosol	86.02	86.49
KRG92501	Soybean	cytosol	85.84	86.0
CDY49990	Canola	cytosol	86.74	85.51
Zm00001d053553_P002	Maize	cytosol	98.21	84.05
Zm00001d007960_P001	Maize	cytosol	30.65	31.2
Zm00001d018694_P002	Maize	cytosol	30.47	31.02
Zm00001d053857_P002	Maize	cytosol	29.93	29.82
Zm00001d027371_P001	Maize	plasma membrane	28.32	29.53
Zm00001d052056_P005	Maize	plasma membrane	28.49	29.17
Zm00001d008369_P001	Maize	cytosol, nucleus	27.42	29.14
Zm00001d018349_P001	Maize	cytosol	28.32	28.99
Zm00001d051742_P001	Maize	plastid	27.78	28.97
Zm00001d040257_P001	Maize	cytosol	27.24	28.95
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	26.88	27.37
Zm00001d007192_P001	Maize	cytosol	25.45	26.35
Zm00001d007508_P005	Maize	cytosol	26.7	26.0
Zm00001d040688_P001	Maize	cytosol	11.11	22.06
Zm00001d052882_P001	Maize	plastid	13.08	14.4

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100285961	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1D6JSN1
InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONL94911.1
ProteinID:ONL94912.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02344	UniParc:UPI0002217C5A	EnsemblPlantsGene:Zm00001d028183	EnsemblPlants:Zm00001d028183_P002	EnsemblPlants:Zm00001d028183_T002	SEG:seg

Description

T-complex protein 1 subunit gamma

Coordinates

chr1:-:25725534..25732327

Molecular Weight (calculated)

60736.8 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.152

Length

558 amino acids

Sequence
(BLAST)

001: MALHAPVLVL KDSLKRESGA KVHQANIQAA KAVADIIRTT LGPRSMLKML LDASGGIVVT NDGNAILREI DIAHPAAKSM IELSRTQDEE VGDGTTSVIV
101: LAGEMLHVAQ AFIDKNYHPT VICRAYTKAL DDAIAVLDKI AMAVDVNDRG AMLGLVKSSI GTKFTGQFGD LIADLAIDAT TTAGVDLGQG MREVDIKKYI
201: KVEKVPGGQL EDSRVLKGVM INKDVVAPGK MRRKIVNPRI ILLDCPVEYK KGENQTNAEL MKEEDWQVLL EMEEEYIKNL CGQILKFKPD LVITEKGLSD
301: LAIHYLSKAG VSAIRRLRKT DNNRIAKACG AVIVNRPEEL QESDVGTRAG LFEVKKIGDE FFSFIVDCKD PKACTVLLRG ASKDVLNEVE RNLQDAMSVA
401: RNILKNPKLL PGGGATELTV SATLKQKSSS VEGVEKWPYE AAALAFEAIP RTLAQNCGLN VIRIMTQLQG KHANGENAWV GIDGRTGDIV DMKERKIWDS
501: YSVKAQTFKT AIEAACMLLR IDDIVSGIKK KQAPGASAPK QPQIETEGDA DNEQMIPE

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.