CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028183_P002	Maize	cytosol	98.92	98.92
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	97.13	97.13
TraesCS7A01G346200.1	Wheat	cytosol	92.83	92.83
HORVU7Hr1G080310.1	Barley	cytosol	92.83	92.83
TraesCS7B01G237000.1	Wheat	cytosol	93.01	91.86
TraesCS7D01G332900.1	Wheat	cytosol	92.83	91.68
GSMUA_Achr6P23290_001	Banana	cytosol	89.78	89.95
VIT_17s0000g08170.t01	Wine grape	cytosol	88.53	88.69
VIT_07s0130g00410.t01	Wine grape	cytosol	88.53	88.69
Bra001174.1-P	Field mustard	cytosol	87.28	87.75
CDX74120	Canola	cytosol	87.28	87.75
GSMUA_Achr5P09040_001	Banana	cytosol	87.46	87.61
PGSC0003DMT400060294	Potato	cytosol	86.92	87.39
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	86.74	87.36
KRH38791	Soybean	cytosol	86.74	87.36
AT5G26360.1	Thale cress	cytosol	86.56	87.03
CDY18835	Canola	cytosol	86.56	87.03
Solyc05g056310.2.1	Tomato	extracellular, plastid	86.74	86.89
Bra040242.1-P	Field mustard	cytosol	86.38	86.85
KRG92501	Soybean	cytosol	86.02	86.18
CDY49990	Canola	cytosol	87.1	85.87
Zm00001d053553_P002	Maize	cytosol	99.28	84.97
EER97880	Sorghum	cytosol	30.65	31.96
EER88530	Sorghum	cytosol	30.65	31.96
EES04545	Sorghum	cytosol	30.29	30.18
EES00273	Sorghum	cytosol	27.24	29.8
EER95631	Sorghum	cytosol	28.14	29.35
EES05938	Sorghum	cytosol	28.49	29.17
EES00491	Sorghum	cytosol	27.42	29.14
EES09994	Sorghum	cytosol	26.52	27.01
EER97762	Sorghum	cytosol	24.73	25.79

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8054213	UniProt:C5WTN6
InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlants:EER92655
ProteinID:EER92655	ProteinID:EER92655.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	EnsemblPlantsGene:SORBI_3001G460500	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
unigene:Sbi.3831	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI0001A8287F	RefSeq:XP_002465657.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:73585121..73591468

Molecular Weight (calculated)

60617.7 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.142

Length

558 amino acids

Sequence
(BLAST)

001: MALHAPVLVL KDSLKRESGA KVHQANIQAA KAVADIIRTT LGPRSMLKML LDAGGGIVVT NDGNAILREI DIAHPAAKSM IELSRTQDEE VGDGTTSVIV
101: LAGEMLHVAQ AFIDKNYHPT VICRAYTKAL DDAIAVLDKI AMPVDVNDRG AMLGLVKSSI GTKFTGQFGD LIADLAIDAT TTAGVDLGQG MREVDIKKYI
201: KVEKVPGGQL EDSRVLKGVM INKDVVAPGK MRRKIVNPRI ILLDCPVEYK KGENQTNAEL MKEEDWQVLL EMEEEYIKNL CAQILKFKPD LVITEKGLSD
301: LAIHYLSKAG VSAIRRLRKT DNNRIAKACG AVIVNRPEEL QESDVGTGAG LFEVKKIGDE FFAFIVDCKD PKACTVLLRG ASKDVLNEVE RNLQDAMSVA
401: RNILKNPKLL PGGGATELTV SATLKQKSSS VEGVEKWPYE AAALAFEAIP RTLAQNCGLN VIRIMTQLQG KHANGENAWV GIDGRSGDIV DMKERKIWDS
501: YSVKAQTFKT AIEAACMLLR IDDIVSGIKK KQAPGASAPK QPQIETEGDA DNEQMIPE

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.