CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38791	Soybean	cytosol	97.83	97.83
KRG92501	Soybean	cytosol	90.43	89.95
VIT_07s0130g00410.t01	Wine grape	cytosol	90.43	89.95
GSMUA_Achr6P23290_001	Banana	cytosol	89.71	89.23
Bra001174.1-P	Field mustard	cytosol	88.81	88.65
CDX74120	Canola	cytosol	88.81	88.65
CDY18835	Canola	cytosol	88.45	88.29
Bra040242.1-P	Field mustard	cytosol	88.27	88.11
VIT_17s0000g08170.t01	Wine grape	cytosol	88.45	87.97
PGSC0003DMT400060294	Potato	cytosol	88.09	87.93
GSMUA_Achr5P09040_001	Banana	cytosol	88.09	87.61
AT5G26360.1	Thale cress	cytosol	87.73	87.57
Solyc05g056310.2.1	Tomato	extracellular, plastid	87.91	87.43
CDY49990	Canola	cytosol	88.63	86.75
EER92655	Sorghum	cytosol	87.36	86.74
Zm00001d028183_P002	Maize	cytosol	87.0	86.38
KRH62778	Soybean	cytosol, endoplasmic reticulum	54.51	86.04
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	86.1	85.48
Os02t0247200-01	Rice	cytosol	85.92	85.15
HORVU7Hr1G080310.1	Barley	cytosol	84.3	83.69
TraesCS7A01G346200.1	Wheat	cytosol	83.94	83.33
TraesCS7B01G237000.1	Wheat	cytosol	84.12	82.48
TraesCS7D01G332900.1	Wheat	cytosol	83.94	82.3
KRH33254	Soybean	cytosol	11.55	81.01
Zm00001d053553_P002	Maize	cytosol	86.64	73.62
KRH62761	Soybean	mitochondrion	8.48	34.56
KRH57568	Soybean	cytosol	6.5	32.73
KRH76087	Soybean	cytosol, endoplasmic reticulum	9.03	31.85
KRG97508	Soybean	cytosol, nucleus	30.51	31.59
KRH31372	Soybean	nucleus	30.51	31.59
KRH60476	Soybean	endoplasmic reticulum	29.06	30.21
KRH41771	Soybean	endoplasmic reticulum, nucleus	29.06	30.21
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	30.14	29.82
KRH73433	Soybean	endoplasmic reticulum, nucleus	29.96	29.64
KRH49364	Soybean	endoplasmic reticulum, nucleus	27.08	29.35
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	28.7	29.17
KRH59103	Soybean	nucleus	28.52	28.99
KRH30467	Soybean	nucleus	27.26	28.65
KRH25193	Soybean	nucleus	27.08	28.46
KRH70153	Soybean	nucleus	26.71	27.16
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	26.53	26.97
KRH01781	Soybean	nucleus	24.91	25.79
KRH46911	Soybean	endoplasmic reticulum	24.73	25.61

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100802143	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02010275
InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_16G208700
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457
GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	UniProt:I1MQD0	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
EnsemblPlants:KRH09301	ProteinID:KRH09301	ProteinID:KRH09301.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI000233B1D9	:	:

Description

hypothetical protein

Coordinates

chr16:-:36814752..36820289

Molecular Weight (calculated)

60196.2 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.091

Length

554 amino acids

Sequence
(BLAST)

001: MHAPVLVLKD SLKRESGSKV RYAIIQAAEA VADVVRTTLG PRSMLKMLLD AQGGIVVTND GNAILRELDL AHPAAKSMIE LSRTQDEEVG DGTTSVIILA
101: GEMLHVADAF IDKIHPTVIC RAYAKALEDA IAVLDKIAMP INAQDRGIML GLVKSCIGTK FTGRFGDLIA DLAIDATTTV GVEVGQGLRD VDIKNYIKVE
201: KVPGGQLEDS RVLKGVMINK DVVAPGKMRR KIVNPRIILL DCPLEYKKGE NQTNAELLKE EDWSLLLKME EEYIEELCMQ ILKFKPDLVI TEKGLSDLAC
301: HYLSKHGVSA IRRLRKTDNN RIAKACGAVI VNRPDELQES DVGTGAGLFE VKKIGDEYFA FIVDCKEPKA CTVLLRGASK DLLNEVERNL QDAMSVARNI
401: IKNPKLVPGG GATELTVSAA LKQKSSSIEG IEKWPYEAAA LAFEAIPRTL AQNCGVNVIR TMTALQGKHA NGENAWIGID GNTGSITDMK ECKIWDAYNV
501: KAQAFKTAIE AACMLLRIDD IVSGIKKKQA PGATPSKPKV ETEADADSEQ ILPD

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.