CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	89.95	90.43
VIT_07s0130g00410.t01	Wine grape	cytosol	89.95	89.95
KRH38791	Soybean	cytosol	89.41	89.89
VIT_17s0000g08170.t01	Wine grape	cytosol	88.69	88.69
Bra001174.1-P	Field mustard	cytosol	87.43	87.75
CDX74120	Canola	cytosol	87.43	87.75
GSMUA_Achr6P23290_001	Banana	cytosol	87.43	87.43
CDY18835	Canola	cytosol	86.71	87.03
Bra040242.1-P	Field mustard	cytosol	86.53	86.85
PGSC0003DMT400060294	Potato	cytosol	86.36	86.67
AT5G26360.1	Thale cress	cytosol	86.0	86.31
KRH33254	Soybean	cytosol	12.21	86.08
EER92655	Sorghum	cytosol	86.18	86.02
Solyc05g056310.2.1	Tomato	extracellular, plastid	86.0	86.0
CDY49990	Canola	cytosol	87.25	85.87
Zm00001d028183_P002	Maize	cytosol	86.0	85.84
GSMUA_Achr5P09040_001	Banana	cytosol	85.82	85.82
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	85.1	84.95
Os02t0247200-01	Rice	cytosol	84.38	84.08
TraesCS7A01G346200.1	Wheat	cytosol	83.84	83.69
HORVU7Hr1G080310.1	Barley	cytosol	83.48	83.33
TraesCS7B01G237000.1	Wheat	cytosol	83.66	82.48
TraesCS7D01G332900.1	Wheat	cytosol	83.48	82.3
KRH62778	Soybean	cytosol, endoplasmic reticulum	50.99	80.91
Zm00001d053553_P002	Maize	cytosol	85.46	73.01
KRH57568	Soybean	cytosol	6.64	33.64
KRH62761	Soybean	mitochondrion	8.08	33.09
KRG97508	Soybean	cytosol, nucleus	30.7	31.96
KRH31372	Soybean	nucleus	30.7	31.96
KRH76087	Soybean	cytosol, endoplasmic reticulum	8.62	30.57
KRH60476	Soybean	endoplasmic reticulum	28.9	30.21
KRH41771	Soybean	endoplasmic reticulum, nucleus	28.9	30.21
KRH49364	Soybean	endoplasmic reticulum, nucleus	26.93	29.35
KRH30467	Soybean	nucleus	27.47	29.03
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	28.37	28.99
KRH25193	Soybean	nucleus	27.29	28.84
KRH59103	Soybean	nucleus	28.19	28.81
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	28.9	28.75
KRH73433	Soybean	endoplasmic reticulum, nucleus	28.73	28.57
KRH70153	Soybean	nucleus	26.75	27.34
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	26.75	27.34
KRH01781	Soybean	nucleus	25.85	26.92
KRH46911	Soybean	endoplasmic reticulum	25.67	26.73

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100778141	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02012759
InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_20G215100
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457
GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	UniProt:I1NIE7	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
ProteinID:KRG92500.1	EnsemblPlants:KRG92501	ProteinID:KRG92501	ProteinID:KRG92501.1	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI000233DC57	:

Description

hypothetical protein

Coordinates

chr20:-:45082945..45090244

Molecular Weight (calculated)

60761.8 Da

IEP (calculated)

6.221

GRAVY (calculated)

-0.151

Length

557 amino acids

Sequence
(BLAST)

001: MQSPVLVLKD SLKRESGRKV QHANIQAAKA VADIIRTTLG PRSMLKMLLD ASGGIVVTND GNAILREIDL AHPAAKSMIE LSRTQDEEVG DGTTSVIILA
101: GEMLHVAEAL IDKNYHPTVI CRAYDKALED AIAVLDKIAM PVDANDRGTM LGIVKSCIGT KFTSQFGDLV ADLAIDATTT VDIDLGLGLR DVDIKNYIKV
201: EKVPGGQLED SRVLKGVMIN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAEMLK EEDWSLLLRM EEEYIEELCM QILKFKPDLV ITEKGLNDLA
301: CHFLSKHGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDVGTGAGLF EVKKIGDEFF AFIVECKDPK ACTVLLRGAS KDLLNEVERN LQDAMSVARN
401: IIKNSKLVPG GGATELTISA TLKQKSSSVQ GIQKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWMGI NGNTGDITDM KECKIWDAYN
501: VKAQTFKTAI EAACMLLRID DVVSGIKKRQ APGAGQARSK PKVETEVDAD SEQILPD

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.