Factsheet for Solyc05g056310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060294	Potato	cytosol	98.92	99.28
VIT_07s0130g00410.t01	Wine grape	cytosol	89.95	89.95
Bra001174.1-P	Field mustard	cytosol	88.33	88.65
CDX74120	Canola	cytosol	88.33	88.65
VIT_17s0000g08170.t01	Wine grape	cytosol	88.33	88.33
GSMUA_Achr6P23290_001	Banana	cytosol	88.15	88.15
CDY18835	Canola	cytosol	87.79	88.11
Bra040242.1-P	Field mustard	cytosol	87.79	88.11
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	87.43	87.91
AT5G26360.1	Thale cress	cytosol	87.43	87.75
KRH38791	Soybean	cytosol	87.07	87.55
CDY49990	Canola	cytosol	88.15	86.75
EER92655	Sorghum	cytosol	86.89	86.74
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	86.89	86.74
GSMUA_Achr5P09040_001	Banana	cytosol	86.71	86.71
Zm00001d028183_P002	Maize	cytosol	86.71	86.56
Os02t0247200-01	Rice	cytosol	86.53	86.23
KRG92501	Soybean	cytosol	86.0	86.0
TraesCS7A01G346200.1	Wheat	cytosol	84.74	84.59
HORVU7Hr1G080310.1	Barley	cytosol	84.38	84.23
TraesCS7B01G237000.1	Wheat	cytosol	84.56	83.36
TraesCS7D01G332900.1	Wheat	cytosol	84.38	83.19
Zm00001d053553_P002	Maize	cytosol	86.53	73.93
Solyc05g013990.2.1	Tomato	nucleus	29.98	31.21
Solyc06g065520.2.1	Tomato	nucleus, plastid	30.52	30.47
Solyc03g118910.1.1	Tomato	plastid	28.73	29.68
Solyc11g069000.1.1	Tomato	extracellular	28.01	29.66
Solyc01g090750.2.1	Tomato	nucleus	27.83	28.44
Solyc02g085790.2.1	Tomato	extracellular	25.85	26.92
Solyc02g063090.2.1	Tomato	nucleus, unclear	25.85	26.92
Solyc01g088080.2.1	Tomato	nucleus	25.49	26.25

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:K4C2V5	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
EnsemblPlantsGene:Solyc05g056310.2	EnsemblPlants:Solyc05g056310.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI0002765707	:

Description

T-complex protein 1 subunit gamma [Source:Projected from Arabidopsis thaliana (AT5G26360) UniProtKB/Swiss-Prot;Acc:Q84WV1]

Coordinates

chr5:+:65645697..65652959

Molecular Weight (calculated)

60703.9 Da

IEP (calculated)

5.664

GRAVY (calculated)

-0.134

Length

557 amino acids

Sequence
(BLAST)

001: MHAPVLVMQD SMKREQGGKV QRANIQAAKA VADIIRTTLG PRSMLKMLLD AAGGIVVTND GNAILRELDL AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF IDKKYHPTVI CRAYAKALED AVAVLDKIAM TVDVEDRETM LGLVKSCIGT KFTSQFGDLI SDLAIDATRM VGVELGQGLR EVDIKKYIKI
201: EKVPGGQLED SVVLKGVMMN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELLR EEDWTVLLKM EEEYIENMCA QILKFKPDVV ITEKGLSDLA
301: CHYLCKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDVGTGAGLF EVKKIGDEFF TFIVDCKDPK ACTILLRGAS KDLLNEVERN LQDAMSVARN
401: IIKCPKLVPG GGATELTVSA MLKQKSSSVE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWIGI DGNTGEITDM KERKIWDSYA
501: VKAQAFKTAI EAACLLLRID DIVSGIKKKQ APGAGQGPSK PKIDEEGDAD NDQLIPE

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.