Factsheet for Os06t0538000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92655	Sorghum	cytosol	97.13	97.13
Zm00001d028183_P002	Maize	cytosol	97.13	97.13
Os02t0247200-01	Rice	cytosol	94.09	93.92
TraesCS7A01G346200.1	Wheat	cytosol	92.47	92.47
HORVU7Hr1G080310.1	Barley	cytosol	92.47	92.47
TraesCS7B01G237000.1	Wheat	cytosol	92.65	91.5
TraesCS7D01G332900.1	Wheat	cytosol	92.47	91.33
GSMUA_Achr6P23290_001	Banana	cytosol	89.07	89.23
VIT_17s0000g08170.t01	Wine grape	cytosol	87.99	88.15
VIT_07s0130g00410.t01	Wine grape	cytosol	87.81	87.97
Bra001174.1-P	Field mustard	cytosol	87.28	87.75
CDX74120	Canola	cytosol	87.28	87.75
PGSC0003DMT400060294	Potato	cytosol	86.92	87.39
CDY18835	Canola	cytosol	86.56	87.03
GSMUA_Achr5P09040_001	Banana	cytosol	86.74	86.89
Solyc05g056310.2.1	Tomato	extracellular, plastid	86.74	86.89
Bra040242.1-P	Field mustard	cytosol	86.2	86.67
AT5G26360.1	Thale cress	cytosol	85.84	86.31
KRH38791	Soybean	cytosol	85.48	86.1
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	85.48	86.1
CDY49990	Canola	cytosol	87.1	85.87
KRG92501	Soybean	cytosol	84.95	85.1
Zm00001d053553_P002	Maize	cytosol	96.42	82.52
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	30.65	31.96
Os02t0332200-01	Rice	plasma membrane	29.21	30.52
Os10t0514600-01	Rice	plasma membrane	28.85	29.76
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	28.85	29.54
Os03t0619400-01	Rice	plasma membrane	27.42	29.14
Os06t0687700-01	Rice	plasma membrane	15.23	28.15
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	27.42	28.02
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	25.45	26.54
Os05t0556700-01	Rice	cytosol, plasma membrane	14.52	24.7

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:4341219	EMBL:AK069949
ProteinID:BAD54324.1	ProteinID:BAF19710.1	ProteinID:BAS98109.1	InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlantsGene:Os06g0538000	EnsemblPlants:Os06t0538000-01	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	UniProt:Q5Z6U5	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI0000446FF4	RefSeq:XP_015644062.1
SEG:seg	:	:	:	:	:

Description

Similar to T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma) (Matricin) (mTRiC-P5). (Os06t0538000-01)

Coordinates

chr6:+:20158669..20165601

Molecular Weight (calculated)

60901.9 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.163

Length

558 amino acids

Sequence
(BLAST)

001: MALNAPVLVL KDSLKRESGT KVHHANIQAA KAVADIIRTT LGPRSMLKML LDASGGIVVT NDGNAILREI DIAHPAAKSM IELSRTQDEE VGDGTTSVIV
101: LAGEMLHVAE AFIDKHYHPT VICRAYTKAL EDALAVLDKI AMHVDVNDRA AMLGLVKSSI GTKFTGQFGD LIADLAIDAT TTAGVDLGQG MREVDIKKYI
201: KVEKVPGGQL EDSRVLKGVM FNKDVVAPGK MRRKIVNPRI ILLDCPVEYK KGENQTNAEL MKEEDWQVLL EMEEEYIKNL CAQILKFKPD LVVTEKGLSD
301: LAIHYLSKAG VSAIRRLRKT DNNRIAKACG AVIVNRPEEL QESDVGTRAG LFEVKKIGDE FFTFIVDCKD PKACTVLLRG ASKDVLNEVE RNLQDAMSVA
401: RNILKNPKLL PGGGATELTV SAALKQKSSS VEGVEKWPYE AAALAFEAIP RTLAQNCGLN VIRIMTQLQG KHANGENAWV GIDGRSGDIV DMKERKIWDS
501: YSVKAQTFKT AIEAACMLLR IDDIVSGIKK KQAPGASAPK QPQIEQEGDA DNEQMIPE

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.