Factsheet for Os02t0332200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0619400-01
Os05t0556700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	Os03t0619400-01	AT5G20890.1	21798944
AT3G18190.1	Os05t0556700-01	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95631	Sorghum	cytosol	94.94	94.77
Zm00001d027371_P001	Maize	plasma membrane	94.38	94.21
Zm00001d051742_P001	Maize	plastid	93.82	93.64
HORVU7Hr1G034140.1	Barley	plasma membrane	92.32	92.32
TraesCS7D01G164400.1	Wheat	cytosol	91.57	91.57
TraesCS7B01G068100.1	Wheat	golgi, unclear	91.57	91.57
TraesCS7A01G426400.1	Wheat	unclear	91.57	91.57
Os10t0514600-01	Rice	plasma membrane	90.82	89.65
TraesCS6B01G391500.1	Wheat	mitochondrion	82.21	84.1
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	82.02	82.18
KRH60476	Soybean	endoplasmic reticulum	80.71	80.86
KRH41771	Soybean	endoplasmic reticulum, nucleus	79.96	80.11
Bra021300.1-P	Field mustard	cytosol	79.03	79.47
PGSC0003DMT400014441	Potato	plastid	80.15	79.41
CDY18509	Canola	cytosol	78.84	79.28
CDX92212	Canola	cytosol, plastid	79.03	79.17
CDY24438	Canola	cytosol, plastid	79.03	79.17
Solyc03g118910.1.1	Tomato	plastid	79.78	79.04
CDX95541	Canola	cytosol, plastid	79.03	79.03
AT3G18190.1	Thale cress	cytosol, plastid	78.84	78.54
GSMUA_Achr6P09540_001	Banana	cytosol	53.93	78.47
Bra022292.1-P	Field mustard	cytosol, plastid	78.28	78.42
KRH49364	Soybean	endoplasmic reticulum, nucleus	74.34	77.69
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	36.89	36.82
Os03t0619400-01	Rice	plasma membrane	32.21	32.76
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	31.46	30.83
Os05t0556700-01	Rice	cytosol, plasma membrane	18.73	30.49
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	30.52	29.21
Os02t0247200-01	Rice	cytosol	29.96	28.62
Os06t0687700-01	Rice	plasma membrane	15.54	27.48
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	26.97	26.37
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	26.22	26.17

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.50.7.10	EntrezGene:4329211	EMBL:AK067672	ProteinID:BAD16520.1
ProteinID:BAF08639.1	ProteinID:BAS78442.1	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
ProteinID:EEE66980.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
EnsemblPlantsGene:Os02g0332200	EnsemblPlants:Os02t0332200-01	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	UniProt:Q6YUK5	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI0000358D76	RefSeq:XP_015626328.1	SEG:seg	:

Description

Similar to T-complex protein 1 delta subunit. (Os02t0332200-01);Similar to T-complex protein 1, delta subunit. (Os02t0332200-02)

Coordinates

chr2:-:13560755..13565938

Molecular Weight (calculated)

57751.3 Da

IEP (calculated)

6.996

GRAVY (calculated)

0.065

Length

534 amino acids

Sequence
(BLAST)

001: MATAVAASPA QSRKTETYTD TKRRDDVRGL NIAAARAVAD AVRTSLGPRG MDKMISSGEQ EVIITNDGAT ILSRMSLLQP AARMLAELSR SQDAAAGDGT
101: TTVVVLAGSL LRRAQSLLSA GAHPTAAADA LHRLATRAVE VLHAMAIPIE LSDRDSLVKS ASTALNSKVV SQYSSLLSPL AVDAALSVVD PAHPDLLDLR
201: DIRVVKKLGG TVDDTELIRG LIFDKKASHA AGGPTRVENA KIAVIQFQVS PPKTDIEQSV IVSDYAQMDR ILREERNYIL GMVKKIKASG CNVLLIQKSI
301: LRDAVTDLSL HYLAKAKILV VKDVERDEIE FITKTLNCLP IANIEHFRED KLGYADLVEE VSVGESKIVK IMGIKDMGRT ATVLVRGSNQ LVIDEAERSL
401: HDALCVIRCL VNKRFLIAGG GAPEIEMSMQ LAAWAKELQG MESYCIKEFA EALEVIPYTL AENAGLNPIS IVTELRNRHA KGEKNAGINV RKGQITNILE
501: ENVVQPLLVS TSAITLACEC VRMILKIDDI VTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.