CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70950
CDX88835
CDX92428
CDY09085
CDY16573
CDY72106
CDY72126

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	CDX70950	AT5G20890.1	21798944
AT3G18190.1	CDX88835	AT5G20890.1	21798944
AT3G18190.1	CDX92428	AT5G20890.1	21798944
AT3G18190.1	CDY09085	AT5G20890.1	21798944
AT3G18190.1	CDY16573	AT5G20890.1	21798944
AT3G18190.1	CDY72106	AT5G20890.1	21798944
AT3G18190.1	CDY72126	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92212	Canola	cytosol, plastid	99.62	99.62
Bra022292.1-P	Field mustard	cytosol, plastid	98.87	98.87
CDX95541	Canola	cytosol, plastid	98.69	98.5
CDY18509	Canola	cytosol	98.12	98.49
AT3G18190.1	Thale cress	cytosol, plastid	95.12	94.59
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	89.49	89.49
KRH60476	Soybean	endoplasmic reticulum	89.49	89.49
KRH41771	Soybean	endoplasmic reticulum, nucleus	89.31	89.31
PGSC0003DMT400014441	Potato	plastid	88.93	87.94
Solyc03g118910.1.1	Tomato	plastid	88.74	87.76
KRH49364	Soybean	endoplasmic reticulum, nucleus	82.74	86.3
GSMUA_Achr3P20910_001	Banana	cytosol	55.35	85.26
Os02t0332200-01	Rice	plasma membrane	79.17	79.03
HORVU7Hr1G034140.1	Barley	plasma membrane	79.17	79.03
Zm00001d027371_P001	Maize	plasma membrane	79.17	78.88
EER95631	Sorghum	cytosol	79.17	78.88
TraesCS7D01G164400.1	Wheat	cytosol	78.61	78.46
TraesCS7B01G068100.1	Wheat	golgi, unclear	78.61	78.46
TraesCS7A01G426400.1	Wheat	unclear	78.61	78.46
Zm00001d051742_P001	Maize	plastid	78.24	77.94
GSMUA_Achr6P09540_001	Banana	cytosol	51.78	75.2
Os10t0514600-01	Rice	plasma membrane	75.98	74.86
TraesCS6B01G391500.1	Wheat	mitochondrion	72.23	73.75
CDY72126	Canola	cytosol	15.76	39.62
CDY72106	Canola	cytosol	15.57	39.15
CDY11302	Canola	cytosol	8.82	36.72
CDY43747	Canola	cytosol	8.82	36.72
CDY54836	Canola	cytosol	36.4	36.26
CDY03881	Canola	cytosol	36.4	36.26
CDY36138	Canola	cytosol	36.4	36.26
CDY51593	Canola	cytosol	36.4	36.19
CDX84951	Canola	cytosol	36.21	36.07
CDX70950	Canola	cytosol	33.77	34.16
CDX92428	Canola	cytosol	33.4	33.78
CDY09085	Canola	cytosol	33.4	33.78
CDY16573	Canola	cytosol	33.21	33.59
CDY24564	Canola	cytosol	33.96	33.21
CDY36063	Canola	cytosol	33.77	33.03
CDX82264	Canola	cytosol	33.77	33.03
CDY42227	Canola	cytosol	33.58	32.84
CDY25374	Canola	cytosol	33.58	32.84
CDY33444	Canola	cytosol	33.58	31.79
CDY01062	Canola	cytosol	29.08	30.75
CDY08491	Canola	cytosol	28.89	30.56
CDY47913	Canola	cytosol	14.82	30.27
CDX73850	Canola	cytosol	29.08	30.21
CDY53919	Canola	cytosol	28.89	30.14
CDY71043	Canola	cytosol	17.45	29.52
CDY18835	Canola	cytosol	30.39	29.19
CDX74120	Canola	cytosol	30.39	29.19
CDY67306	Canola	cytosol	18.39	28.99
CDY49990	Canola	cytosol	30.39	28.62
CDX70671	Canola	cytosol	25.33	25.23
CDX78670	Canola	cytosol	25.33	25.23
CDX69477	Canola	cytosol	25.33	25.19
CDY26490	Canola	cytosol	25.33	25.19
CDY29973	Canola	cytosol	25.7	25.18
CDY28697	Canola	cytosol	25.14	25.05
CDY51544	Canola	cytosol	25.14	25.05
CDY21153	Canola	cytosol	25.52	25.0
CDX74202	Canola	cytosol, plasma membrane	25.33	24.64
CDX92056	Canola	cytosol	25.33	24.64
CDY42892	Canola	cytosol	24.77	24.26
CDY50868	Canola	cytosol	24.39	23.9
CDX88835	Canola	mitochondrion	33.4	23.42
CDX79329	Canola	cytosol	11.26	22.73
CDY50320	Canola	cytosol	11.07	22.35

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.50.7.10	GO:A0A078GII6	UniProt:A0A078GII6	EnsemblPlants:CDY24438
ProteinID:CDY24438	ProteinID:CDY24438.1	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00026691001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02342	UniParc:UPI0004EBE4DC	SEG:seg	:	:	:

Description

BnaC05g35160DT-complex protein 1 subunit delta [Source:UniProtKB/TrEMBL;Acc:A0A078GII6]

Coordinates

chrLK032159:+:40695..42642

Molecular Weight (calculated)

57390.1 Da

IEP (calculated)

7.501

GRAVY (calculated)

0.107

Length

533 amino acids

Sequence
(BLAST)

001: MAAVTASRPR ASKAESFVDN KRKEDIRSAN INAARAVADA VRTSLGPKGM DKMISTASGE VIITNDGATI LNKMDVLQPA AKMMVELSKS QDSAAGDGTT
101: TVVVLAGALL RVCQTLLGSG IHPTVISDAL HKSCAKSVDI LTAMAVPVEL TDRDSLVKSA STSLNSKVVS QYSTLLAPLA VDAVLSVIDP EKPEIVDLRD
201: IKIVKKLGGT VDDTHTVNGL VFDKKVSHAA GGPTRMENAK IAVIQFQISP PKTDIEQSIV VSDYTQMDRI LKEERNYILG MIKKIKATGC NVLLIQKSIL
301: RDAVTDLSLH YLAKAKIMVI KDVERDEIEF VTKTLNCLPI ANIEHFRAEK LGFADLVEEA SLGDGKILKI TGIKDMGRTT SVLVRGSNQL VLDEAERSLH
401: DALCVVRCLV SKRFLIAGGG APEIELSRQL GAWAKVLHGM EGYCVKSFAE ALEVIPYTLA ENAGLNPIAI VTELRNKHAQ GEINSGINVR KGQITNILEE
501: NVVQPLLVST SAITLATECV RMILKIDDIV TVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.