Factsheet for HORVU7Hr1G034140.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G068820.1
HORVU5Hr1G085530.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	HORVU4Hr1G068820.1	AT5G20890.1	21798944
AT3G18190.1	HORVU5Hr1G085530.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G164400.1	Wheat	cytosol	99.06	99.06
TraesCS7B01G068100.1	Wheat	golgi, unclear	99.06	99.06
TraesCS7A01G426400.1	Wheat	unclear	99.06	99.06
EER95631	Sorghum	cytosol	93.45	93.27
Zm00001d051742_P001	Maize	plastid	93.26	93.08
Os02t0332200-01	Rice	plasma membrane	92.32	92.32
Zm00001d027371_P001	Maize	plasma membrane	92.13	91.96
TraesCS6B01G391500.1	Wheat	mitochondrion	87.83	89.85
Os10t0514600-01	Rice	plasma membrane	86.7	85.58
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	80.15	80.3
KRH60476	Soybean	endoplasmic reticulum	79.59	79.74
Bra021300.1-P	Field mustard	cytosol	78.84	79.28
PGSC0003DMT400014441	Potato	plastid	79.96	79.22
CDX95541	Canola	cytosol, plastid	79.21	79.21
CDX92212	Canola	cytosol, plastid	79.03	79.17
KRH41771	Soybean	endoplasmic reticulum, nucleus	79.03	79.17
CDY24438	Canola	cytosol, plastid	79.03	79.17
CDY18509	Canola	cytosol	78.65	79.1
Solyc03g118910.1.1	Tomato	plastid	79.59	78.85
Bra022292.1-P	Field mustard	cytosol, plastid	78.28	78.42
AT3G18190.1	Thale cress	cytosol, plastid	78.65	78.36
KRH49364	Soybean	endoplasmic reticulum, nucleus	73.41	76.71
GSMUA_Achr6P09540_001	Banana	cytosol	52.25	76.02
HORVU7Hr1G088080.1	Barley	cytosol	36.52	36.25
HORVU5Hr1G085530.1	Barley	mitochondrion	32.77	31.88
HORVU4Hr1G068820.1	Barley	cytosol	32.77	31.25
HORVU1Hr1G054530.14	Barley	cytosol	16.48	29.83
HORVU6Hr1G025270.1	Barley	cytosol	31.09	29.8
HORVU7Hr1G080310.1	Barley	cytosol	29.03	27.78
HORVU7Hr1G044070.2	Barley	cytosol	28.65	26.8
HORVU1Hr1G052730.26	Barley	cytosol	18.73	25.77
HORVU4Hr1G040660.1	Barley	cytosol	25.28	25.0
HORVU6Hr1G091690.4	Barley	cytosol, plastid	25.84	24.21

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:AK366086	InterPro:Chap_CCT_delta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	UniProt:F2DQB8	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0046686
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	EnsemblPlantsGene:HORVU7Hr1G034140	EnsemblPlants:HORVU7Hr1G034140.1	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02342	UniParc:UPI0002006B04	SEG:seg	:	:	:

Description

T-complex protein 1 subunit delta [Source:UniProtKB/TrEMBL;Acc:F2DQB8]

Coordinates

chrchr7H:+:70692028..70695858

Molecular Weight (calculated)

57441.9 Da

IEP (calculated)

6.996

GRAVY (calculated)

0.079

Length

534 amino acids

Sequence
(BLAST)

001: MAAAAVAAAP SARKGETYTD TKRRDDVRGA NIAAARAVAD AVRTSLGPRG MDKMISSGDQ EVIITNDGAT ILSRMSLLQP AARMLAELSR SQDAAAGDGT
101: TTVVVLAGAL LRRAQSLLAA GAHPTAAADS LHRLAARAVQ VLEGMAIPIE LTDRDSLVKS ASTALNSKVV SQYSSLLAPL AVDAALSVVD PAHPELLDLR
201: DIRIIKKLGG TVDDTELVRG LIFDKKASHA AGGPSRIENA KIAVIQFQIS PPKTDIEQSV IVSDYAQMDR ILREERNYIL GMVKKIKASG CNVLLIQKSI
301: LRDAVTELSL HYLAKAKILV VKDVERDEIE FITKTLNCLP IANIEHFRED KLGYADVVEE VSAGDGKIVK ITGIRDMGRT ATVLVRGSNQ LVIDEADRSL
401: HDALCVIRCL VNKRFLIAGG GAPEIEMSMQ LAAWSKELHG MESYCIKEFA DALEVIPYTL AENAGLNPIA IVTELRNRHA KGEKNTGINV RKGQITNILE
501: ENVVQPLLVS TSAISLACEC VRMILKIDDI VTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.