Factsheet for Os10t0514600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0619400-01
Os05t0556700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	Os03t0619400-01	AT5G20890.1	21798944
AT3G18190.1	Os05t0556700-01	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0332200-01	Rice	plasma membrane	89.65	90.82
EER95631	Sorghum	cytosol	87.62	88.6
Zm00001d051742_P001	Maize	plastid	86.88	87.85
Zm00001d027371_P001	Maize	plasma membrane	86.88	87.85
HORVU7Hr1G034140.1	Barley	plasma membrane	85.58	86.7
TraesCS7D01G164400.1	Wheat	cytosol	85.03	86.14
TraesCS7B01G068100.1	Wheat	golgi, unclear	85.03	86.14
TraesCS7A01G426400.1	Wheat	unclear	85.03	86.14
TraesCS6B01G391500.1	Wheat	mitochondrion	76.89	79.69
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	77.08	78.24
KRH60476	Soybean	endoplasmic reticulum	76.34	77.49
KRH41771	Soybean	endoplasmic reticulum, nucleus	75.79	76.92
Bra021300.1-P	Field mustard	cytosol	75.23	76.65
CDY18509	Canola	cytosol	75.05	76.46
CDX95541	Canola	cytosol, plastid	75.42	76.4
CDX92212	Canola	cytosol, plastid	75.05	76.17
CDY24438	Canola	cytosol, plastid	74.86	75.98
Solyc03g118910.1.1	Tomato	plastid	75.6	75.88
PGSC0003DMT400014441	Potato	plastid	75.6	75.88
GSMUA_Achr6P09540_001	Banana	cytosol	51.39	75.75
Bra022292.1-P	Field mustard	cytosol, plastid	74.49	75.61
AT3G18190.1	Thale cress	cytosol, plastid	74.31	75.0
KRH49364	Soybean	endoplasmic reticulum, nucleus	69.69	73.78
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	36.97	37.38
Os03t0619400-01	Rice	plasma membrane	30.5	31.43
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	31.24	31.01
Os05t0556700-01	Rice	cytosol, plasma membrane	17.56	28.96
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	29.76	28.85
Os02t0247200-01	Rice	cytosol	29.57	28.62
Os06t0687700-01	Rice	plasma membrane	15.34	27.48
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	25.69	25.98
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	25.88	25.64

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:4349108	ProteinID:AAG13521.1
ProteinID:AAP54607.1	EMBL:AK070291	ProteinID:BAF26968.1	ProteinID:BAT11649.1	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlantsGene:Os10g0514600	EnsemblPlants:Os10t0514600-01	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	UniProt:Q9FW88	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI000009EA73	RefSeq:XP_015613787.1	SEG:seg

Description

Similar to Clone ZZD584 mRNA sequence. (Os10t0514600-01)

Coordinates

chr10:-:19840596..19842443

Molecular Weight (calculated)

58133.9 Da

IEP (calculated)

8.553

GRAVY (calculated)

0.068

Length

541 amino acids

Sequence
(BLAST)

001: MAAAVAASPA QSRKTETYTD TKRRDDVRGL NIAAGRAVAA AARTSLGPRG MDKMISSSSS GGDQAVIITN DGATILSRMP LLQPAARMLA DLSRSQDAAA
101: GDGTTTVVVL AGSLLRRAQS LLSAGAHPTA AADALHLLAA RAVEVLHGMA IPVELSDRDA LVKSASTALN SKVVSQYSTL LSPLAVDAAL AVVDPAHPYL
201: LDLRDIRVVK KLGCTVDDTE LIRGLVLNKK ASHVAGGPTR IGDAKIAVIQ FQVSPPKTDI EHSVVVSDYA QMDRILREER NYILGMVKKI KASGCNVLLI
301: QKSILRDSVT DLSLHYLAKA KIMVVKDVER DEIEFITKTL NCMPIASIEH LREDKLGHAH LVEEISVGDG NNNKIVKITG IKNMGRTATV LVRGSNQMVI
401: DEAQRSLHDA FCVIRCLVNK RFLIAGGGAP EIEMSMQLAA WAKELRGMES YCVREFAEAL EVIPYTLAEN AGLDPISTVT ELRNRHAKGE KNAGINVRKG
501: RITNILEENV VQPLLVSTSA VTLACECVRM ILKIDDIVTV R

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.