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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, extracellular, cytosol

Predictor Summary:
  • cytosol 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES09994 Sorghum cytosol 95.97 95.62
Zm00001d052948_P001 Maize cytosol, extracellular, mitochondrion 94.51 94.16
HORVU4Hr1G040660.1 Barley cytosol 91.94 92.96
TraesCS4B01G165400.1 Wheat cytosol 91.58 92.59
TraesCS4A01G164900.2 Wheat cytosol 91.58 91.91
TraesCS4D01G157300.1 Wheat cytosol 90.11 91.62
Zm00001d007508_P005 Maize cytosol 94.51 90.05
GSMUA_Achr8P04580_001 Banana cytosol 87.55 87.87
GSMUA_Achr3P25570_001 Banana cytosol 87.0 87.32
VIT_08s0007g07460.t01 Wine grape cytosol 87.0 87.16
KRH08492 Soybean cytosol, endoplasmic reticulum, nucleus 86.81 86.97
KRH70153 Soybean nucleus 86.45 86.61
Solyc01g088080.2.1 Tomato nucleus 85.35 86.14
PGSC0003DMT400017609 Potato cytosol 85.16 85.95
TraesCS6B01G010900.1 Wheat mitochondrion, plastid 82.97 85.31
TraesCS6D01G008000.1 Wheat cytosol 86.81 83.16
Bra036422.1-P Field mustard cytosol 82.05 82.35
CDY29973 Canola cytosol 81.69 81.99
CDY21153 Canola cytosol 81.5 81.8
CDX92056 Canola cytosol 81.87 81.57
AT3G03960.1 Thale cress cytosol 81.5 81.06
Bra001094.1-P Field mustard cytosol 81.32 81.02
CDX74202 Canola cytosol, plasma membrane 81.32 81.02
Bra031959.1-P Field mustard cytosol 80.4 80.7
CDY50868 Canola cytosol 80.22 80.51
CDY42892 Canola cytosol 80.22 80.51
CDY50320 Canola cytosol 36.81 76.14
CDX79329 Canola cytosol 35.9 74.24
Os04t0551800-01 Rice cytosol, golgi, nucleus, plasma membrane, plastid 27.47 27.52
Os06t0538000-01 Rice cytosol, plasma membrane, plastid 28.02 27.42
Os02t0332200-01 Rice plasma membrane 26.37 26.97
Os02t0247200-01 Rice cytosol 27.11 26.48
Os03t0619400-01 Rice plasma membrane 25.09 26.1
Os10t0514600-01 Rice plasma membrane 25.64 25.88
Os06t0562600-01 Rice cytosol, extracellular, plasma membrane 24.91 25.42
Os05t0556700-01 Rice cytosol, plasma membrane 14.84 24.7
Os05t0147400-01 Rice cytosol, plasma membrane, plastid 24.18 24.67
Os06t0687700-01 Rice plasma membrane 12.64 22.85
Protein Annotations
Gene3D:1.10.560.10MapMan:20.3.1.8Gene3D:3.50.7.10EntrezGene:4334490ProteinID:AAS07232.1ProteinID:ABF99427.1
ProteinID:BAF13537.1ProteinID:BAS86931.1InterPro:Chap_CCT_thetaInterPro:Chaperone_TCP-1InterPro:Chaperonin_TCP-1_CSncoils:Coil
InterPro:Cpn60/TCP-1ProteinID:EEE60130.1GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0005832GO:GO:0006457GO:GO:0006458GO:GO:0006810GO:GO:0008150GO:GO:0009506
GO:GO:0009987GO:GO:0016020GO:GO:0044183GO:GO:0051050GO:GO:0051082GO:GO:0061077
InterPro:GROEL-like_equatorial_sfInterPro:GroEL-like_apical_dom_sfInterPro:IPR027409InterPro:IPR027410InterPro:IPR027413EnsemblPlantsGene:Os03g0804800
EnsemblPlants:Os03t0804800-01PFAM:PF00118PRINTS:PR00304ScanProsite:PS00750ScanProsite:PS00751PANTHER:PTHR11353
PANTHER:PTHR11353:SF78UniProt:Q75HJ3SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02346UniParc:UPI000023951FRefSeq:XP_015630542.1:::
Description
Similar to Cct8-prov protein. (Os03t0804800-01)
Coordinates
chr3:+:33592786..33598072
Molecular Weight (calculated)
58787.0 Da
IEP (calculated)
5.085
GRAVY (calculated)
-0.041
Length
546 amino acids
Sequence
(BLAST)
001: MVGLGAMPGY GIQSMLKEGH KHLSGLDEAV LKNIDACREL SAITRTSLGP NGMNKMVINH LDKLFVTNDA ATIVNELEVQ HPAAKILVLA GRAQQEEIGD
101: GANLTISFAG ELLEKAEELI RMGLHPSEII IGYTKAINKT VEILEDLVEK GSENMDVRNK EEVVLLMRSA VASKQFGQED ILCPLVADAC MQVCPKNPAN
201: FNVDNVRVAK LLGGGLHNSS VVRGMVLKND AVGSIKRVEK AKIAVFAGGV DTSATETKGT VLIHSAEQLE NYAKTEEAKV EELIKAVADS GAKVIVSGAA
301: VGDMALHFCE RYKLMVLRIS SKFELRRFCR TTGSIALLKL SRPNADELGY ADSVSVEEIG GARVTVVKNE EGGNSVATVV LRGSTDSILD DLERAVDDGV
401: NTYKSMCRDS RIIPGAAATE IELARRLKEF SLKETGLDQY AIAKFAESFE MVPRTLAENA GLSAMEIISS LYAEHAGGNT KVGIDLEEGG CKDVSIMKIW
501: DLYVTKLFAL KYSADAACTV LRVDQIIMAK PAGGPRRDAQ PGMDED
Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)
001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED
Arabidopsis Description
CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.