Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
26072143
plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os05t0147400-01 | |
Os06t0562600-01 | |
Os06t0687700-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G03960.1 | Os06t0562600-01 | AT1G24510.1 | 21798944 |
AT3G03960.1 | Os06t0687700-01 | AT3G11830.1 | 21798944 |
AT3G03960.1 | Os05t0147400-01 | AT5G16070.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES09994 | Sorghum | cytosol | 95.97 | 95.62 |
Zm00001d052948_P001 | Maize | cytosol, extracellular, mitochondrion | 94.51 | 94.16 |
HORVU4Hr1G040660.1 | Barley | cytosol | 91.94 | 92.96 |
TraesCS4B01G165400.1 | Wheat | cytosol | 91.58 | 92.59 |
TraesCS4A01G164900.2 | Wheat | cytosol | 91.58 | 91.91 |
TraesCS4D01G157300.1 | Wheat | cytosol | 90.11 | 91.62 |
Zm00001d007508_P005 | Maize | cytosol | 94.51 | 90.05 |
GSMUA_Achr8P04580_001 | Banana | cytosol | 87.55 | 87.87 |
GSMUA_Achr3P25570_001 | Banana | cytosol | 87.0 | 87.32 |
VIT_08s0007g07460.t01 | Wine grape | cytosol | 87.0 | 87.16 |
KRH08492 | Soybean | cytosol, endoplasmic reticulum, nucleus | 86.81 | 86.97 |
KRH70153 | Soybean | nucleus | 86.45 | 86.61 |
Solyc01g088080.2.1 | Tomato | nucleus | 85.35 | 86.14 |
PGSC0003DMT400017609 | Potato | cytosol | 85.16 | 85.95 |
TraesCS6B01G010900.1 | Wheat | mitochondrion, plastid | 82.97 | 85.31 |
TraesCS6D01G008000.1 | Wheat | cytosol | 86.81 | 83.16 |
Bra036422.1-P | Field mustard | cytosol | 82.05 | 82.35 |
CDY29973 | Canola | cytosol | 81.69 | 81.99 |
CDY21153 | Canola | cytosol | 81.5 | 81.8 |
CDX92056 | Canola | cytosol | 81.87 | 81.57 |
AT3G03960.1 | Thale cress | cytosol | 81.5 | 81.06 |
Bra001094.1-P | Field mustard | cytosol | 81.32 | 81.02 |
CDX74202 | Canola | cytosol, plasma membrane | 81.32 | 81.02 |
Bra031959.1-P | Field mustard | cytosol | 80.4 | 80.7 |
CDY50868 | Canola | cytosol | 80.22 | 80.51 |
CDY42892 | Canola | cytosol | 80.22 | 80.51 |
CDY50320 | Canola | cytosol | 36.81 | 76.14 |
CDX79329 | Canola | cytosol | 35.9 | 74.24 |
Os04t0551800-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 27.47 | 27.52 |
Os06t0538000-01 | Rice | cytosol, plasma membrane, plastid | 28.02 | 27.42 |
Os02t0332200-01 | Rice | plasma membrane | 26.37 | 26.97 |
Os02t0247200-01 | Rice | cytosol | 27.11 | 26.48 |
Os03t0619400-01 | Rice | plasma membrane | 25.09 | 26.1 |
Os10t0514600-01 | Rice | plasma membrane | 25.64 | 25.88 |
Os06t0562600-01 | Rice | cytosol, extracellular, plasma membrane | 24.91 | 25.42 |
Os05t0556700-01 | Rice | cytosol, plasma membrane | 14.84 | 24.7 |
Os05t0147400-01 | Rice | cytosol, plasma membrane, plastid | 24.18 | 24.67 |
Os06t0687700-01 | Rice | plasma membrane | 12.64 | 22.85 |
Protein Annotations
Gene3D:1.10.560.10 | MapMan:20.3.1.8 | Gene3D:3.50.7.10 | EntrezGene:4334490 | ProteinID:AAS07232.1 | ProteinID:ABF99427.1 |
ProteinID:BAF13537.1 | ProteinID:BAS86931.1 | InterPro:Chap_CCT_theta | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS | ncoils:Coil |
InterPro:Cpn60/TCP-1 | ProteinID:EEE60130.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
GO:GO:0005832 | GO:GO:0006457 | GO:GO:0006458 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009506 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0044183 | GO:GO:0051050 | GO:GO:0051082 | GO:GO:0061077 |
InterPro:GROEL-like_equatorial_sf | InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 | EnsemblPlantsGene:Os03g0804800 |
EnsemblPlants:Os03t0804800-01 | PFAM:PF00118 | PRINTS:PR00304 | ScanProsite:PS00750 | ScanProsite:PS00751 | PANTHER:PTHR11353 |
PANTHER:PTHR11353:SF78 | UniProt:Q75HJ3 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 | InterPro:TCP-1-like_intermed_sf |
TIGRFAMs:TIGR02346 | UniParc:UPI000023951F | RefSeq:XP_015630542.1 | : | : | : |
Description
Similar to Cct8-prov protein. (Os03t0804800-01)
Coordinates
chr3:+:33592786..33598072
Molecular Weight (calculated)
58787.0 Da
IEP (calculated)
5.085
GRAVY (calculated)
-0.041
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGLGAMPGY GIQSMLKEGH KHLSGLDEAV LKNIDACREL SAITRTSLGP NGMNKMVINH LDKLFVTNDA ATIVNELEVQ HPAAKILVLA GRAQQEEIGD
101: GANLTISFAG ELLEKAEELI RMGLHPSEII IGYTKAINKT VEILEDLVEK GSENMDVRNK EEVVLLMRSA VASKQFGQED ILCPLVADAC MQVCPKNPAN
201: FNVDNVRVAK LLGGGLHNSS VVRGMVLKND AVGSIKRVEK AKIAVFAGGV DTSATETKGT VLIHSAEQLE NYAKTEEAKV EELIKAVADS GAKVIVSGAA
301: VGDMALHFCE RYKLMVLRIS SKFELRRFCR TTGSIALLKL SRPNADELGY ADSVSVEEIG GARVTVVKNE EGGNSVATVV LRGSTDSILD DLERAVDDGV
401: NTYKSMCRDS RIIPGAAATE IELARRLKEF SLKETGLDQY AIAKFAESFE MVPRTLAENA GLSAMEIISS LYAEHAGGNT KVGIDLEEGG CKDVSIMKIW
501: DLYVTKLFAL KYSADAACTV LRVDQIIMAK PAGGPRRDAQ PGMDED
101: GANLTISFAG ELLEKAEELI RMGLHPSEII IGYTKAINKT VEILEDLVEK GSENMDVRNK EEVVLLMRSA VASKQFGQED ILCPLVADAC MQVCPKNPAN
201: FNVDNVRVAK LLGGGLHNSS VVRGMVLKND AVGSIKRVEK AKIAVFAGGV DTSATETKGT VLIHSAEQLE NYAKTEEAKV EELIKAVADS GAKVIVSGAA
301: VGDMALHFCE RYKLMVLRIS SKFELRRFCR TTGSIALLKL SRPNADELGY ADSVSVEEIG GARVTVVKNE EGGNSVATVV LRGSTDSILD DLERAVDDGV
401: NTYKSMCRDS RIIPGAAATE IELARRLKEF SLKETGLDQY AIAKFAESFE MVPRTLAENA GLSAMEIISS LYAEHAGGNT KVGIDLEEGG CKDVSIMKIW
501: DLYVTKLFAL KYSADAACTV LRVDQIIMAK PAGGPRRDAQ PGMDED
001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED
Arabidopsis Description
CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.