CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79329	Canola	cytosol	95.45	95.45
CDX74202	Canola	cytosol, plasma membrane	87.5	42.15
CDY29973	Canola	cytosol	86.74	42.1
CDY21153	Canola	cytosol	86.74	42.1
CDX92056	Canola	cytosol	87.12	41.97
CDY50868	Canola	cytosol	85.23	41.36
CDY42892	Canola	cytosol	84.47	40.99
Solyc01g088080.2.1	Tomato	nucleus	76.14	37.15
VIT_08s0007g07460.t01	Wine grape	cytosol	76.52	37.06
PGSC0003DMT400017609	Potato	cytosol	75.76	36.97
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	76.14	36.88
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	76.14	36.81
KRH70153	Soybean	nucleus	75.76	36.7
EES09994	Sorghum	cytosol	76.14	36.68
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	75.76	36.5
GSMUA_Achr8P04580_001	Banana	cytosol	74.62	36.21
GSMUA_Achr3P25570_001	Banana	cytosol	74.24	36.03
TraesCS4D01G157300.1	Wheat	cytosol	72.73	35.75
HORVU4Hr1G040660.1	Barley	cytosol	73.11	35.74
TraesCS4B01G165400.1	Wheat	cytosol	73.11	35.74
TraesCS4A01G164900.2	Wheat	cytosol	72.73	35.29
Zm00001d007508_P005	Maize	cytosol	75.76	34.9
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	63.64	31.64
TraesCS6D01G008000.1	Wheat	cytosol	68.18	31.58
CDY11302	Canola	cytosol	14.02	28.91
CDY43747	Canola	cytosol	14.02	28.91
CDY47913	Canola	cytosol	23.48	23.75
CDY72126	Canola	cytosol	18.94	23.58
CDY72106	Canola	cytosol	18.94	23.58
CDY67306	Canola	cytosol	19.32	15.09
CDX74120	Canola	cytosol	27.27	12.97
CDY18835	Canola	cytosol	26.89	12.79
CDY49990	Canola	cytosol	27.27	12.72
CDY25374	Canola	cytosol	25.38	12.29
CDY24564	Canola	cytosol	25.38	12.29
CDY42227	Canola	cytosol	25.38	12.29
CDY51593	Canola	cytosol	24.62	12.13
CDY36063	Canola	cytosol	25.0	12.11
CDX82264	Canola	cytosol	25.0	12.11
CDY54836	Canola	cytosol	24.24	11.96
CDY36138	Canola	cytosol	24.24	11.96
CDX84951	Canola	cytosol	24.24	11.96
CDY03881	Canola	cytosol	24.24	11.96
CDY33444	Canola	cytosol	25.38	11.9
CDY09085	Canola	cytosol	23.11	11.57
CDX70950	Canola	cytosol	22.35	11.2
CDY16573	Canola	cytosol	22.35	11.2
CDX92428	Canola	cytosol	22.35	11.2
CDY18509	Canola	cytosol	22.35	11.11
CDX92212	Canola	cytosol, plastid	22.35	11.07
CDY24438	Canola	cytosol, plastid	22.35	11.07
CDX95541	Canola	cytosol, plastid	22.35	11.05
CDY08491	Canola	cytosol	20.08	10.52
CDY01062	Canola	cytosol	20.08	10.52
CDY53919	Canola	cytosol	20.08	10.37
CDX73850	Canola	cytosol	20.08	10.33
CDY51544	Canola	cytosol	20.08	9.91
CDY28697	Canola	cytosol	20.08	9.91
CDX78670	Canola	cytosol	19.7	9.72
CDX70671	Canola	cytosol	19.7	9.72
CDY26490	Canola	cytosol	19.7	9.7
CDX69477	Canola	cytosol	19.7	9.7
CDX88835	Canola	mitochondrion	22.35	7.76
CDY71043	Canola	cytosol	4.17	3.49

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	GO:A0A078IHA5	UniProt:A0A078IHA5	EnsemblPlants:CDY50320
ProteinID:CDY50320	ProteinID:CDY50320.1	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00096416001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI0004EEBC4B	SEG:seg	:

Description

BnaCnng19030DBnaCnng19030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHA5]

Coordinates

chrLK032900:+:54088..55496

Molecular Weight (calculated)

28231.2 Da

IEP (calculated)

6.354

GRAVY (calculated)

0.084

Length

264 amino acids

Sequence
(BLAST)

001: MQLYSIQSML KEGYIHLSGL DKAVIKNIKA CKELSTITRT SLCPNGLNKM VINHSDKLFV TNDAATIVNE LEIQHPAAKI LVLAAKAQQE EIGDGANLTI
101: SFAGELLQNA DCRGACQDGV VEVLEELVES GSERMDVRSK GEVVSRMRAA VASKQFGQEE IICSLVADAC IQVCPKNPTN FNVDNVRVAK FLAGGLHNSC
201: IVRGMVLESD AVGSIKRMVK AKVAVFAGGV ETTATETKGT VLIHSAEQIS SSGLKIQTVT LNVD

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.