CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74202
CDX92056
CDY21153
CDY26697
CDY29973
CDY41023
CDY42892
CDY50868

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	CDY26697	AT1G19180.1	21798944
AT3G11830.1	CDY41023	AT1G19180.1	21798944
AT3G11830.1	CDX74202	AT3G03960.1	21798944
AT3G11830.1	CDX92056	AT3G03960.1	21798944
AT3G11830.1	CDY21153	AT3G03960.1	21798944
AT3G11830.1	CDY29973	AT3G03960.1	21798944
AT3G11830.1	CDY42892	AT3G03960.1	21798944
AT3G11830.1	CDY50868	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08491	Canola	cytosol	99.4	99.4
CDX73850	Canola	cytosol	98.81	97.08
CDY53919	Canola	cytosol	98.21	96.87
CDY43747	Canola	cytosol	24.4	96.09
CDY11302	Canola	cytosol	24.4	96.09
CDY67306	Canola	cytosol	63.29	94.38
Os06t0687700-01	Rice	plasma membrane	53.77	89.74
GSMUA_Achr2P21510_001	Banana	cytosol	90.67	89.08
AT3G11830.1	Thale cress	cytosol	98.41	89.05
Solyc06g065520.2.1	Tomato	nucleus, plastid	92.26	83.33
PGSC0003DMT400067201	Potato	cytosol	92.06	83.15
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	91.47	82.32
EES04545	Sorghum	cytosol	91.47	82.32
VIT_00s0670g00010.t01	Wine grape	cytosol	91.47	82.03
KRH73433	Soybean	endoplasmic reticulum, nucleus	90.87	81.79
Zm00001d053857_P002	Maize	cytosol	90.87	81.79
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	89.68	81.15
TraesCS6D01G121300.1	Wheat	cytosol	89.68	81.15
TraesCS6B01G159800.1	Wheat	cytosol	89.48	80.97
HORVU6Hr1G025270.1	Barley	cytosol	89.29	80.79
GSMUA_Achr8P16590_001	Banana	plastid	90.28	75.08
CDY47913	Canola	cytosol	37.3	72.03
CDY72126	Canola	cytosol	16.07	38.21
CDY72106	Canola	cytosol	16.07	38.21
CDY16573	Canola	cytosol	35.12	33.59
CDX70950	Canola	cytosol	35.12	33.59
CDY09085	Canola	cytosol	35.12	33.59
CDX92428	Canola	cytosol	35.12	33.59
CDY42227	Canola	cytosol	35.12	32.48
CDY25374	Canola	cytosol	34.33	31.74
CDY24564	Canola	cytosol	34.13	31.56
CDY36063	Canola	cytosol	33.93	31.38
CDX82264	Canola	cytosol	33.93	31.38
CDY33444	Canola	cytosol	34.92	31.26
CDY71043	Canola	cytosol	18.85	30.16
CDX92212	Canola	cytosol, plastid	30.75	29.08
CDY24438	Canola	cytosol, plastid	30.75	29.08
CDX95541	Canola	cytosol, plastid	30.75	29.03
CDY18509	Canola	cytosol	30.56	29.0
CDY18835	Canola	cytosol	31.35	28.47
CDX74120	Canola	cytosol	31.35	28.47
CDY49990	Canola	cytosol	31.55	28.09
CDY54836	Canola	cytosol	29.17	27.48
CDX84951	Canola	cytosol	28.97	27.29
CDY36138	Canola	cytosol	28.97	27.29
CDY03881	Canola	cytosol	28.77	27.1
CDY51593	Canola	cytosol	28.77	27.05
CDX74202	Canola	cytosol, plasma membrane	25.4	23.36
CDX88835	Canola	mitochondrion	35.12	23.29
CDX92056	Canola	cytosol	25.2	23.18
CDY21153	Canola	cytosol	24.8	22.98
CDY50868	Canola	cytosol	24.8	22.98
CDY29973	Canola	cytosol	24.8	22.98
CDY42892	Canola	cytosol	24.8	22.98
CDX70671	Canola	cytosol	23.61	22.24
CDY51544	Canola	cytosol	23.61	22.24
CDY28697	Canola	cytosol	23.61	22.24
CDX78670	Canola	cytosol	23.61	22.24
CDX69477	Canola	cytosol	23.41	22.01
CDY26490	Canola	cytosol	23.41	22.01
CDY50320	Canola	cytosol	10.52	20.08
CDX79329	Canola	cytosol	10.12	19.32

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078EIV6	EnsemblPlants:CDY01062
ProteinID:CDY01062	ProteinID:CDY01062.1	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00111102001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI0004EF4CAF	SEG:seg	:	:

Description

BnaC05g41380D

Coordinates

chrLK031923:+:962430..965894

Molecular Weight (calculated)

54214.9 Da

IEP (calculated)

5.822

GRAVY (calculated)

-0.127

Length

504 amino acids

Sequence
(BLAST)

001: MDKLIHDDKG SVTISNDGAT IMKLLDIVHP AAKILVDIAK SQDSEVGDGT TTVVLLAAEF LKEAKPFVED GVHSQNLIRS YRTASALAIE KVKELAVSIE
101: GKSVEEKKGL LAKCAATTLS SKLIGGEKEF FATMVVDAVM AIGDDDRLNL IGIKKVPGGN MRDSFLVDGV AFKKTFSYAG FEQQPKKFDN PKILLLNIEL
201: ELKSEKENAE IRLSDPSQYQ SIVDAEWNII YDKLDKCVES GAKVVLSRLA IGDLATQYFA DRDIFCAGRV AEEDLNRVAA AAGGTIQTSV LGTCEIFEEK
301: QVGGERFNIF SGCPSGRTAT IVLRGGADQF IEEAERSLHD AIMIVRRAVK NSTVVPGGGA IDMEISKYLR QHSRTIAGKS QLFINSYAKA LEVIPRQLCD
401: NAGFDATDVL NKLRQKHAMQ SGEGASYGVD INTGGIADSF ANFVWEPAVV KINAINAATE AACLILSVDE TVKNPKSESA QGDAAAGAMG RGRGGGRGRG
501: MRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.