Factsheet for VIT_00s0670g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g07460.t01
VIT_11s0016g00710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	VIT_11s0016g00710.t01	AT1G19180.1	21798944
AT3G11830.1	VIT_08s0007g07460.t01	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21510_001	Banana	cytosol	85.94	94.15
Solyc06g065520.2.1	Tomato	nucleus, plastid	93.06	93.73
Os06t0687700-01	Rice	plasma membrane	50.36	93.71
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	93.24	93.57
PGSC0003DMT400067201	Potato	cytosol	92.88	93.55
KRH73433	Soybean	endoplasmic reticulum, nucleus	92.88	93.21
EES04545	Sorghum	cytosol	91.64	91.96
AT3G11830.1	Thale cress	cytosol	91.1	91.92
CDY01062	Canola	cytosol	82.03	91.47
CDY08491	Canola	cytosol	82.03	91.47
Zm00001d053857_P002	Maize	cytosol	90.93	91.25
CDX73850	Canola	cytosol	83.1	91.03
Bra038682.1-P	Field mustard	cytosol	89.86	90.99
CDY53919	Canola	cytosol	82.38	90.61
Bra034807.1-P	Field mustard	cytosol	85.59	90.58
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	89.15	89.95
TraesCS6D01G121300.1	Wheat	cytosol	88.97	89.77
TraesCS6B01G159800.1	Wheat	cytosol	88.97	89.77
Bra001423.1-P	Field mustard	cytosol	89.32	89.64
HORVU6Hr1G025270.1	Barley	cytosol	88.79	89.59
CDY67306	Canola	cytosol	53.56	89.05
GSMUA_Achr8P16590_001	Banana	plastid	94.13	87.29
VIT_18s0001g00480.t01	Wine grape	cytosol	33.63	35.73
VIT_15s0021g02230.t01	Wine grape	cytosol	33.63	34.62
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	30.78	32.46
VIT_07s0130g00410.t01	Wine grape	cytosol	30.43	30.7
VIT_17s0000g08170.t01	Wine grape	cytosol	29.54	29.8
VIT_12s0028g00350.t01	Wine grape	cytosol	28.29	29.72
VIT_14s0006g03200.t01	Wine grape	cytosol	24.73	25.98
VIT_08s0007g07460.t01	Wine grape	cytosol	24.91	25.69
VIT_05s0094g00640.t01	Wine grape	cytosol	7.12	24.84
VIT_01s0137g00250.t01	Wine grape	cytosol	28.83	24.47

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100245611	wikigene:100245611	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EMBL:AM457854	ProteinID:CAN70107	ProteinID:CAN70107.1	ProteinID:CBI35717	ProteinID:CBI35717.3	InterPro:Chap_CCT_eta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	UniProt:D7TYZ1	EMBL:FN596307	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458
GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0046686	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100245611
wikigene:LOC100245611	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	TIGR:TC60443
TIGR:TC65212	TIGR:TC67456	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI0001BE48B1	ArrayExpress:VIT_00s0670g00010
EnsemblPlantsGene:VIT_00s0670g00010	EnsemblPlants:VIT_00s0670g00010.t01	unigene:Vvi.7969	RefSeq:XP_002266000	RefSeq:XP_002266000.2	SEG:seg

Description

No Description!

Coordinates

chrUn:-:33933940..33943300

Molecular Weight (calculated)

60617.9 Da

IEP (calculated)

6.533

GRAVY (calculated)

-0.084

Length

562 amino acids

Sequence
(BLAST)

001: MAAMLQPQII LLKEGTDTSQ GKAQLVSNIS ACTVVADVVR TTLGPRGMDK LIHDDKGNTT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAGEFLKE AKPFIEDGVH PQNLIRSYRT ASYLAIEKIK ELAVSIEGKS LEEKKSLLAK CAATTLSSKL IGGEKEFFAS MVVDSVIAIG NDDRLNMIGI
201: KKVPGGTMRD SFLVNGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPLQYQSIV DAEWNIIYDK LDKCVQSGAK IVLSRLAIGD
301: LATQYFADRD IFCAGRVTEE DLQRVAAATG GTVQTTVNNI IDEVLGSCEL FEERQVGNER FNIFSGCPSG QTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RALKNSTVVA GGGAIDMEIS RYLRQHARTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HALPSGEGGL FGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLVL SVDETVKNPK SESAQGEAAA SAMGGRGRGG AFRGRGRGMR RR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.