Factsheet for TraesCS6A01G131400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, unclear, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, mitochondrion, unclear
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
mitochondrion: 26136264

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2B01G195600.1
TraesCS2D01G176800.1
TraesCS4A01G164900.2
TraesCS4B01G165400.1
TraesCS4D01G157300.1
TraesCS5A01G212800.1
TraesCS5B01G211000.1
TraesCS5D01G219300.2
TraesCS6B01G010900.1
TraesCS6D01G008000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	TraesCS2A01G169300.1	AT1G19180.1	21798944
AT3G11830.1	TraesCS2B01G195600.1	AT1G19180.1	21798944
AT3G11830.1	TraesCS2D01G176800.1	AT1G19180.1	21798944
AT3G11830.1	TraesCS5A01G212800.1	AT1G19180.1	21798944
AT3G11830.1	TraesCS5B01G211000.1	AT1G19180.1	21798944
AT3G11830.1	TraesCS5D01G219300.2	AT1G19180.1	21798944
AT3G11830.1	TraesCS4A01G164900.2	AT3G03960.1	21798944
AT3G11830.1	TraesCS4B01G165400.1	AT3G03960.1	21798944
AT3G11830.1	TraesCS4D01G157300.1	AT3G03960.1	21798944
AT3G11830.1	TraesCS6B01G010900.1	AT3G03960.1	21798944
AT3G11830.1	TraesCS6D01G008000.1	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G121300.1	Wheat	cytosol	99.46	99.46
TraesCS6B01G159800.1	Wheat	cytosol	99.1	99.1
HORVU6Hr1G025270.1	Barley	cytosol	98.56	98.56
EES04545	Sorghum	cytosol	94.43	93.93
Os06t0687700-01	Rice	plasma membrane	50.81	93.71
Zm00001d053857_P002	Maize	cytosol	93.72	93.21
Solyc06g065520.2.1	Tomato	nucleus, plastid	90.13	89.96
PGSC0003DMT400067201	Potato	cytosol	89.95	89.78
CDY08491	Canola	cytosol	81.15	89.68
CDY01062	Canola	cytosol	81.15	89.68
GSMUA_Achr2P21510_001	Banana	cytosol	82.59	89.67
AT3G11830.1	Thale cress	cytosol	89.59	89.59
VIT_00s0670g00010.t01	Wine grape	cytosol	89.95	89.15
CDX73850	Canola	cytosol	82.05	89.08
Bra038682.1-P	Field mustard	cytosol	88.51	88.83
CDY53919	Canola	cytosol	81.33	88.65
Bra034807.1-P	Field mustard	cytosol	84.02	88.14
Bra001423.1-P	Field mustard	cytosol	88.15	87.68
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	88.15	87.68
KRH73433	Soybean	endoplasmic reticulum, nucleus	87.97	87.5
CDY67306	Canola	cytosol	52.78	86.98
GSMUA_Achr8P16590_001	Banana	plastid	89.41	82.18
TraesCS4A01G054800.1	Wheat	cytosol, unclear	34.11	36.19
TraesCS5A01G342600.1	Wheat	cytosol	34.29	36.17
TraesCS4A01G427500.1	Wheat	cytosol, unclear	34.29	35.05
TraesCS7A01G062100.1	Wheat	cytosol	34.11	34.86
TraesCS7A01G217200.1	Wheat	cytosol	33.93	34.68
TraesCS1A01G205200.1	Wheat	cytosol	32.67	33.39
TraesCS7A01G426400.1	Wheat	unclear	29.08	30.34
TraesCS7A01G358400.1	Wheat	cytosol, unclear	29.08	30.28
TraesCS1A01G213800.1	Wheat	cytosol	20.83	29.37
TraesCS7A01G346200.1	Wheat	cytosol	28.19	28.14
TraesCS6A01G399300.1	Wheat	golgi	24.96	25.98
TraesCS4A01G164900.2	Wheat	cytosol	23.88	24.45

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0046686	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	EnsemblPlantsGene:TraesCS6A01G131400	EnsemblPlants:TraesCS6A01G131400.1
TIGR:cd03340	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:103953871..103958758

Molecular Weight (calculated)

60036.1 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.119

Length

557 amino acids

Sequence
(BLAST)

001: MSSMMQPQII LLKEGTDTSQ GRAQVVSNIS ACTAVADTVR TTLGPRGMDK LIHDDKGTTI SNDGATIMRL LDIVHPAAKI LVDIAKSQDS EVGDGTTTVV
101: LLAAEFMKEA KPYVEDGVHC HNIIRSYRSA GNMAIERVKE LAVSIEGKSL EEKKSLLAKC AATTLSSKLI SGEKEFFASM VVDAVLAIGH DDRLNLIGIK
201: KVPGGTMRDS FLVNGVAFKK TFSYAGFEQQ PKKFLNPKIL LLNIELELKS EKENAEIRLS DPLQYQSIVD AEWNIIYDKL DKCVQSGAKI VLSRLAIGDL
301: ATQYFADRDI FCAGRVTEED LQRLSSATGG TVQTSVNNVI DEVLGTCEVF EEKQVGNERF NIFSGCPSGQ TATIVLRGGA DQFIEEAERS LHDAIMIVRR
401: AVRNSTVVPG GGAIDMEISK YLRLHARNIA GKSQVFVNSF AKALEVIPRQ LCDNAGFDAT DVLNKLRQKH AADGGANYGV DINTGGIADS FANFVWEPAV
501: VKINAINAAT EAACLILSVD ETVKNPKSES AQGDAAAMGG RGGGGMRGRG GRGMRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.