Factsheet for TraesCS7A01G358400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G595300.1
TraesCS4A01G054800.1
TraesCS4B01G250200.1
TraesCS4D01G250100.1
TraesCS5A01G342600.1
TraesCS5B01G341900.1
TraesCS5D01G347400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	TraesCS3B01G595300.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4A01G054800.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4B01G250200.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4D01G250100.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5A01G342600.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5B01G341900.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5D01G347400.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G269300.2	Wheat	cytosol	100.0	100.0
TraesCS7D01G364400.2	Wheat	cytosol	99.63	99.63
HORVU7Hr1G088080.1	Barley	cytosol	99.63	99.07
PGSC0003DMT400073555	Potato	cytosol	45.23	92.72
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	92.15	92.15
EER88530	Sorghum	cytosol	91.78	91.78
EER97880	Sorghum	cytosol	91.59	91.59
GSMUA_Achr6P06770_001	Banana	cytosol	82.24	91.1
Solyc05g013990.2.1	Tomato	nucleus	90.65	90.65
TraesCS1A01G213800.1	Wheat	cytosol	66.54	90.13
Zm00001d018694_P002	Maize	cytosol	91.4	89.23
Zm00001d007960_P001	Maize	cytosol	91.4	89.23
GSMUA_AchrUn_...	Banana	cytosol	89.16	89.16
PGSC0003DMT400027968	Potato	cytosol	36.45	89.04
KRH31372	Soybean	nucleus	88.41	88.41
KRG97508	Soybean	cytosol, nucleus	88.22	88.22
CDY36138	Canola	cytosol	87.29	87.29
CDY51593	Canola	cytosol	87.29	87.13
CDY54836	Canola	cytosol	87.1	87.1
CDY03881	Canola	cytosol	87.1	87.1
Bra012506.1-P	Field mustard	cytosol	87.1	87.1
Bra032797.1-P	Field mustard	cytosol	87.1	87.1
Bra010965.1-P	Field mustard	cytosol	86.92	86.92
AT1G24510.1	Thale cress	cytosol	86.73	86.73
CDX84951	Canola	cytosol	86.73	86.73
VIT_12s0028g00350.t01	Wine grape	cytosol	86.54	86.54
VIT_01s0137g00250.t01	Wine grape	cytosol	89.53	72.36
TraesCS7A01G426400.1	Wheat	unclear	36.45	36.52
TraesCS4A01G054800.1	Wheat	cytosol, unclear	34.77	35.43
TraesCS5A01G342600.1	Wheat	cytosol	34.95	35.42
TraesCS4A01G427500.1	Wheat	cytosol, unclear	31.78	31.19
TraesCS7A01G062100.1	Wheat	cytosol	31.59	31.01
TraesCS7A01G217200.1	Wheat	cytosol	31.59	31.01
TraesCS7A01G346200.1	Wheat	cytosol	32.34	31.0
TraesCS1A01G205200.1	Wheat	cytosol	30.47	29.91
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	30.28	29.08
TraesCS6A01G399300.1	Wheat	golgi	27.1	27.1
TraesCS4A01G164900.2	Wheat	cytosol	23.93	23.53

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	EnsemblPlantsGene:TraesCS7A01G358400	EnsemblPlants:TraesCS7A01G358400.1
TIGR:cd03339	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:529325860..529332077

Molecular Weight (calculated)

58846.4 Da

IEP (calculated)

5.331

GRAVY (calculated)

-0.143

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDEYGR PFIILREQEK KSRLQGLDAQ KANIAAGKSV ARILRTSLGP KGMDKMLQSP DGDVTITNDG ATILELMDVD NQIAKLMVEL SRSQDYDIGD
101: GTTGVVVLAG SLLEQAEKLL ERGIHPIRIA EGYEMASRIA VDHLESISTK YEFSATDIEP LVQTCMTTLS SKIVSRCKRA LAEIAVKAVL AVADLERKDV
201: NLDLIKVEGK VGGKLEDTEL VQGIIVDKDM SHPQMPKRIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF QTLRGQEQKY FDDMVQKCKD VGATLVICQW
301: GFDDEANHLL MQRELPAVRW VGGVELELIA IATGGRIVPR FQELTTEKLG KAGLVREKSF GTTKDRMLYI EKCANSKAVT IFIRGGNKMM IEETKRSIHD
401: ALCVARNLII NNSIVYGGGS AEISCSIAVD AAADRHPGVE QYAIRAFADA LDAIPLALAE NSGLPPIDTL TVVKSQHVKE NNSRCGIDCN DVGTNDMKEQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI TPSEY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.