Factsheet for PGSC0003DMT400027968

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G213800.1	Wheat	cytosol	85.39	47.34
PGSC0003DMT400073555	Potato	cytosol	49.77	41.76
GSMUA_Achr6P06770_001	Banana	cytosol	88.13	39.96
Solyc05g013990.2.1	Tomato	nucleus	97.26	39.81
VIT_12s0028g00350.t01	Wine grape	cytosol	91.32	37.38
GSMUA_AchrUn_...	Banana	cytosol	90.41	37.01
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	89.95	36.82
EER97880	Sorghum	cytosol	89.95	36.82
TraesCS7D01G364400.2	Wheat	cytosol	89.04	36.45
TraesCS7B01G269300.2	Wheat	cytosol	89.04	36.45
TraesCS7A01G358400.1	Wheat	cytosol, unclear	89.04	36.45
EER88530	Sorghum	cytosol	89.04	36.45
HORVU7Hr1G088080.1	Barley	cytosol	89.5	36.43
TraesCS1D01G216600.1	Wheat	cytosol	88.13	36.07
Zm00001d007960_P001	Maize	cytosol	89.95	35.95
TraesCS1B01G227600.1	Wheat	cytosol	87.67	35.89
Zm00001d018694_P002	Maize	cytosol	89.5	35.77
VIT_01s0137g00250.t01	Wine grape	cytosol	91.78	30.36
PGSC0003DMT400019727	Potato	cytosol	14.16	22.3
PGSC0003DMT400014441	Potato	plastid	38.36	15.58
PGSC0003DMT400033155	Potato	cytosol	19.63	12.18
PGSC0003DMT400060294	Potato	cytosol	30.59	12.07
PGSC0003DMT400067201	Potato	cytosol	30.59	12.01
PGSC0003DMT400066954	Potato	cytosol	27.85	11.19
PGSC0003DMT400062134	Potato	cytosol	25.11	10.28
PGSC0003DMT400033011	Potato	cytosol	24.2	9.91
PGSC0003DMT400017609	Potato	cytosol	23.74	9.61
HORVU1Hr1G054530.14	Barley	cytosol	12.79	9.49
PGSC0003DMT400050534	Potato	cytosol	7.76	5.38

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:M1AQG0	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400010776	PGSC:PGSC0003DMG400010776	EnsemblPlants:PGSC0003DMT400027968
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	UniParc:UPI000294F02E	:	:	:	:

Description

Chaperonin containing t-complex protein 1, epsilon subunit, tcpe [Source:PGSC_GENE;Acc:PGSC0003DMG400010776]

Coordinates

chr5:+:11213912..11214833

Molecular Weight (calculated)

24642.2 Da

IEP (calculated)

5.676

GRAVY (calculated)

-0.203

Length

219 amino acids

Sequence
(BLAST)

001: MDVDNQIGKL MVELSRSQDY EIGDGTTGVV VMAGALLEQA EKLLERGIHP IRIAEGYEMA SRIAVEHLEH VAHKFEFGLN DIEPLVQTCM TTLSSKIVNR
101: CKRSMAEIAV KAVLAVADLE RKDVNLDLIK VEGKVGGKLE DTELIYGIIV DKDMSHPQMP KQIEDAKIAI LTCPFEPPKP KTKHKVDIDT VEKFQTLRLQ
201: EQKYFDDMVQ KCKVKLLNL

Best Arabidopsis Sequence Match ( AT1G24510.3 )
(BLAST)

001: MNRSIYFLKI DSLSNDGATI LEQMDVDNQI AKLMVELSRS QDYEIGDGTT GVVVMAGALL EQAERQLDRG IHPIRIAEGY EMASRVAVEH LERIAQKFEF
101: DVNNYEPLVQ TCMTTLSSKI VNRCKRSLAE IAVKAVLAVA DLERRDVNLD LIKVEGKVGG KLEDTELIYG ILIDKDMSHP QMPKQIEDAH IAILTCPFEP
201: PKPKTKHKVD IDTVEKFETL RKQEQQYFDE MVQKCKDVGA TLVICQWGFD DEANHLLMHR NLPAVRWVGG VELELIAIAT GGRIVPRFQE LTPEKLGKAG
301: VVREKSFGTT KERMLYIEHC ANSKAVTVFI RGGNKMMIEE TKRSIHDALC VARNLIRNKS IVYGGGAAEI ACSLAVDAAA DKYPGVEQYA IRAFAEALDS
401: VPMALAENSG LQPIETLSAV KSQQIKENIP FYGIDCNDVG TNDMREQNVF ETLIGKQQQI LLATQVVKMI LKIDDVISNS EY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.