Factsheet for TraesCS1D01G216600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G595300.1
TraesCS4A01G054800.1
TraesCS4B01G250200.1
TraesCS4D01G250100.1
TraesCS5A01G342600.1
TraesCS5B01G341900.1
TraesCS5D01G347400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	TraesCS3B01G595300.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4A01G054800.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4B01G250200.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4D01G250100.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5A01G342600.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5B01G341900.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5D01G347400.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G227600.1	Wheat	cytosol	99.44	99.44
TraesCS1A01G213800.1	Wheat	cytosol	73.08	98.99
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	91.59	91.59
GSMUA_Achr6P06770_001	Banana	cytosol	82.24	91.1
PGSC0003DMT400073555	Potato	cytosol	44.3	90.8
EER88530	Sorghum	cytosol	90.47	90.47
EER97880	Sorghum	cytosol	90.47	90.47
TraesCS7D01G364400.2	Wheat	cytosol	89.91	89.91
Solyc05g013990.2.1	Tomato	nucleus	89.35	89.35
HORVU1Hr1G054530.14	Barley	cytosol	48.97	88.81
GSMUA_AchrUn_...	Banana	cytosol	88.41	88.41
Zm00001d018694_P002	Maize	cytosol	90.28	88.14
Zm00001d007960_P001	Maize	cytosol	90.28	88.14
PGSC0003DMT400027968	Potato	cytosol	36.07	88.13
KRH31372	Soybean	nucleus	88.04	88.04
KRG97508	Soybean	cytosol, nucleus	87.85	87.85
VIT_12s0028g00350.t01	Wine grape	cytosol	86.92	86.92
CDY36138	Canola	cytosol	86.73	86.73
CDY54836	Canola	cytosol	86.54	86.54
CDY51593	Canola	cytosol	86.54	86.38
CDY03881	Canola	cytosol	86.36	86.36
Bra010965.1-P	Field mustard	cytosol	86.36	86.36
Bra012506.1-P	Field mustard	cytosol	86.36	86.36
AT1G24510.1	Thale cress	cytosol	86.17	86.17
CDX84951	Canola	cytosol	86.17	86.17
Bra032797.1-P	Field mustard	cytosol	85.98	85.98
VIT_01s0137g00250.t01	Wine grape	cytosol	89.16	72.05
TraesCS4D01G250100.1	Wheat	cytosol	34.21	36.6
TraesCS7D01G164400.1	Wheat	cytosol	35.7	35.77
TraesCS5D01G347400.1	Wheat	cytosol	34.77	35.23
TraesCS7D01G056800.1	Wheat	cytosol	32.34	31.74
TraesCS7D01G218500.2	Wheat	cytosol	32.34	30.3
TraesCS6D01G121300.1	Wheat	cytosol	30.28	29.08
TraesCS7D01G332900.1	Wheat	cytosol	30.65	29.03
TraesCS1D01G208500.1	Wheat	cytosol	26.73	28.71
TraesCS6D01G383500.1	Wheat	unclear	27.29	27.29
TraesCS4D01G157300.1	Wheat	cytosol	23.74	23.65
TraesCS6D01G008000.1	Wheat	cytosol	23.18	21.75

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	EnsemblPlantsGene:TraesCS1D01G216600	EnsemblPlants:TraesCS1D01G216600.1
TIGR:cd03339	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:302378108..302382896

Molecular Weight (calculated)

58942.3 Da

IEP (calculated)

5.323

GRAVY (calculated)

-0.155

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDDFGR PFIILREQES KSRLRGLDAH KANVAAGKAV ARSLRTSLGP KGMDKILQSP DGDVTITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVLAG SLLEQAEKLL ERGIHPIRIA EGYEMASKIA FDHLEHISTR FEFTAANIEP LVQTCMTTLS SKIVNRCKRM LAEIAVRAVL AVADLERKDV
201: NLDLIKVEGK VGGKLEDTEL IYGIAVDKDM SHPQMPKRIE DANIAILTCP FEPPKPKTKH KVDIDTVEKF QTMRGQEQKY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MQRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPDKLG QAGLVREKSF GTTKDRMLCI ERCANSRAVT IFIRGGNKMM IEEAKRSIHD
401: ALCVARNLIR NNSIVYGGGS AEISCSVAVE AAADRYAGAE QYAIRSFADA LDGIPLALAE NSGLPPIDTL TAVKSQQIQE NNPYCGIDCN DVGTNDMREQ
501: HVFETLIGKQ QQILLATQVV KMILKIDDVI TPSEF

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.