Factsheet for TraesCS5B01G341900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G347400.1	Wheat	cytosol	99.06	99.62
TraesCS5A01G342600.1	Wheat	cytosol	99.06	99.62
TraesCS4B01G250200.1	Wheat	cytosol	92.47	98.2
HORVU5Hr1G085530.1	Barley	mitochondrion	99.06	95.81
EES00491	Sorghum	cytosol	93.6	94.67
EES00273	Sorghum	cytosol	90.77	94.51
Os03t0619400-01	Rice	plasma membrane	93.03	94.1
Zm00001d040257_P001	Maize	cytosol	92.84	93.9
Zm00001d008369_P001	Maize	cytosol, nucleus	91.53	92.57
GSMUA_Achr2P01800_001	Banana	cytosol	87.95	88.61
VIT_18s0001g00480.t01	Wine grape	cytosol	87.95	88.28
KRH25193	Soybean	nucleus	87.38	88.05
Bra020134.1-P	Field mustard	cytosol	83.8	87.77
KRH30467	Soybean	nucleus	87.01	87.67
CDY72106	Canola	cytosol	34.84	87.26
AT5G20890.1	Thale cress	cytosol	86.44	87.1
CDY71043	Canola	cytosol	51.6	86.98
CDY72126	Canola	cytosol	34.65	86.79
Bra002337.1-P	Field mustard	cytosol	86.06	86.72
CDY16573	Canola	cytosol	86.06	86.72
CDY09085	Canola	cytosol	86.06	86.72
CDX70950	Canola	cytosol	86.06	86.72
Solyc11g069000.1.1	Tomato	extracellular	85.88	86.69
CDX92428	Canola	cytosol	85.88	86.53
TraesCS3B01G595300.1	Wheat	cytosol	20.9	82.22
GSMUA_Achr3P24440_001	Banana	peroxisome	83.43	80.55
Bra006584.1-P	Field mustard	cytosol	85.69	60.83
PGSC0003DMT400019727	Potato	cytosol	15.82	60.43
CDX88835	Canola	mitochondrion	85.69	59.87
TraesCS1B01G218800.1	Wheat	cytosol	32.02	36.02
TraesCS7B01G269300.2	Wheat	cytosol	35.22	34.95
TraesCS1B01G227600.1	Wheat	cytosol	35.22	34.95
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	35.78	34.86
TraesCS6B01G159800.1	Wheat	cytosol	35.78	34.11
TraesCS7B01G068100.1	Wheat	golgi, unclear	32.39	32.21
TraesCS6B01G391500.1	Wheat	mitochondrion	28.63	29.12
TraesCS7B01G237000.1	Wheat	cytosol	28.06	26.37
TraesCS4B01G165400.1	Wheat	cytosol	25.05	24.63
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	23.73	23.73

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	EnsemblPlantsGene:TraesCS5B01G341900	EnsemblPlants:TraesCS5B01G341900.1
TIGR:cd03336	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:526588963..526593709

Molecular Weight (calculated)

58014.3 Da

IEP (calculated)

5.570

GRAVY (calculated)

-0.124

Length

531 amino acids

Sequence
(BLAST)

001: MPCNLEMERV LKDDAIQEKG ERARMASFVG AMAIADLVKT TLGPKGMDKI LQSTGRGRSV TVTNDGATIL KSLHIDNPAA KVLVDISKVQ DDEVGDGTTS
101: VVVLAGELLR EAEKLVNMKI HPMTIIAGYR MAAECARNAL LQKTMDNKDN TDKFRSDLMN IAMTTLSSKI LSQDKEYFAE LAVDAVLRLK GSTNLESIQI
201: LKKPGGSLKD SFLDEGFILD KKIGLGQPKR IENANILVAN TAMDTDKVKI YGARVRVDSM SKVADIEAAE KQKMREKVEK IIGHGINCFV NRQLIYNFPE
301: ELFADAGILA VEHADFEGIE RLALVTGGDI ASTFDNPESV KLGHCKLIEE IMIGEDRLIH FSGVAMGQAC TIVLRGASEH VLDEAERSLH DALCVLSQTV
401: NDTRVIFGGG WPEMVMSKEV DELARRTPGK KSHAIDAFSR ALQAIPTIIA DNAGLDSAEL ISQLRAEHHK ENSTVGIDVI SGGLGDMQKR GICEAFKVKQ
501: AIVLSATEAA EMILRVDEII TCAPRRREDR M

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.