Factsheet for PGSC0003DMT400019727

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G595300.1	Wheat	cytosol	41.73	42.96
EES00273	Sorghum	cytosol	58.99	16.08
Os03t0619400-01	Rice	plasma membrane	60.43	16.0
TraesCS5A01G342600.1	Wheat	cytosol	60.43	15.91
TraesCS5B01G341900.1	Wheat	cytosol	60.43	15.82
TraesCS4A01G054800.1	Wheat	cytosol, unclear	59.71	15.81
TraesCS5D01G347400.1	Wheat	cytosol	59.71	15.72
EES00491	Sorghum	cytosol	58.99	15.62
Zm00001d040257_P001	Maize	cytosol	58.27	15.43
HORVU5Hr1G085530.1	Barley	mitochondrion	59.71	15.12
Zm00001d008369_P001	Maize	cytosol, nucleus	56.83	15.05
HORVU4Hr1G068820.1	Barley	cytosol	59.71	14.82
PGSC0003DMT400027968	Potato	cytosol	22.3	14.16
TraesCS4D01G250100.1	Wheat	cytosol	48.2	13.4
TraesCS4B01G250200.1	Wheat	cytosol	48.2	13.4
PGSC0003DMT400014441	Potato	plastid	36.69	9.46
PGSC0003DMT400067201	Potato	cytosol	34.53	8.6
PGSC0003DMT400066954	Potato	cytosol	32.37	8.26
PGSC0003DMT400062134	Potato	cytosol	29.5	7.66
PGSC0003DMT400033011	Potato	cytosol	29.5	7.66
PGSC0003DMT400060294	Potato	cytosol	29.5	7.39
PGSC0003DMT400017609	Potato	cytosol	25.18	6.47
Zm00001d052882_P001	Maize	plastid	17.99	4.93
PGSC0003DMT400073555	Potato	cytosol	7.91	4.21
PGSC0003DMT400033155	Potato	cytosol	10.07	3.97
Zm00001d040688_P001	Maize	cytosol	7.19	3.56
Os05t0556700-01	Rice	cytosol, plasma membrane	5.76	2.44
PGSC0003DMT400050534	Potato	cytosol	5.04	2.22

Protein Annotations

Gene3D:1.10.560.10	MapMan:35.1	InterPro:Chap_CCT_beta	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:IPR027413	UniProt:M1ACH3	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400007622
PGSC:PGSC0003DMG400007622	EnsemblPlants:PGSC0003DMT400019727	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	UniParc:UPI0002953816

Description

Chaperonin containing t-complex protein 1, beta subunit, tcpb [Source:PGSC_GENE;Acc:PGSC0003DMG400007622]

Coordinates

chr4:-:11319568..11321477

Molecular Weight (calculated)

15253.7 Da

IEP (calculated)

4.649

GRAVY (calculated)

0.305

Length

139 amino acids

Sequence
(BLAST)

001: MTCSQIDKLF KDEATEEKGE RARMASFIGA MAIADLVKTT LGPKGMDDEV GDGTTSVVVL AGELLREAEK LVNAKIHPMT IIAVLACCFV FKWASFLLSI
101: EASSVLALRC LTVVNLEKLD YLSLDDIECY DRLKVCTRT

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.