CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00491	Sorghum	cytosol	100.0	97.14
Zm00001d040257_P001	Maize	cytosol	97.25	94.48
Zm00001d008369_P001	Maize	cytosol, nucleus	96.27	93.52
Os03t0619400-01	Rice	plasma membrane	95.29	92.57
TraesCS4A01G054800.1	Wheat	cytosol, unclear	94.12	91.43
TraesCS4D01G250100.1	Wheat	cytosol	89.41	91.2
TraesCS5D01G347400.1	Wheat	cytosol	94.31	91.1
TraesCS5A01G342600.1	Wheat	cytosol	94.31	91.1
TraesCS4B01G250200.1	Wheat	cytosol	89.22	91.0
TraesCS5B01G341900.1	Wheat	cytosol	94.51	90.77
HORVU5Hr1G085530.1	Barley	mitochondrion	94.51	87.8
GSMUA_Achr2P01800_001	Banana	cytosol	89.41	86.53
VIT_18s0001g00480.t01	Wine grape	cytosol	89.41	86.2
HORVU4Hr1G068820.1	Barley	cytosol	94.12	85.71
Bra020134.1-P	Field mustard	cytosol	85.1	85.6
KRH25193	Soybean	nucleus	88.24	85.39
KRH30467	Soybean	nucleus	87.84	85.01
Solyc11g069000.1.1	Tomato	extracellular	87.65	84.98
CDY71043	Canola	cytosol	52.35	84.76
Bra002337.1-P	Field mustard	cytosol	87.25	84.44
CDX70950	Canola	cytosol	87.25	84.44
CDY16573	Canola	cytosol	87.25	84.44
CDY72106	Canola	cytosol	35.1	84.43
CDX92428	Canola	cytosol	87.06	84.25
CDY09085	Canola	cytosol	87.06	84.25
AT5G20890.1	Thale cress	cytosol	86.86	84.06
CDY72126	Canola	cytosol	34.9	83.96
GSMUA_Achr3P24440_001	Banana	peroxisome	84.51	78.36
Bra006584.1-P	Field mustard	cytosol	87.06	59.36
PGSC0003DMT400019727	Potato	cytosol	16.08	58.99
CDX88835	Canola	mitochondrion	87.06	58.42
EES05938	Sorghum	cytosol	36.27	33.95
EER88530	Sorghum	cytosol	35.1	33.46
EES04545	Sorghum	cytosol	36.67	33.39
EER97880	Sorghum	cytosol	34.9	33.27
EER95631	Sorghum	cytosol	33.14	31.59
EER97762	Sorghum	cytosol	30.39	28.97
EER92655	Sorghum	cytosol	29.8	27.24
EES09994	Sorghum	cytosol	27.06	25.18

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:C5XP67	InterPro:Chap_CCT_beta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlants:EES00273	ProteinID:EES00273	ProteinID:EES00273.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457
GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23
EnsemblPlantsGene:SORBI_3003G060500	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341
UniParc:UPI0001A84690	RefSeq:XP_002455153.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:5341124..5345159

Molecular Weight (calculated)

55762.7 Da

IEP (calculated)

5.322

GRAVY (calculated)

-0.120

Length

510 amino acids

Sequence
(BLAST)

001: MERVLKDDAV QEKGERARMA SFIGAMAIAD LIKTTLGPKG MDKILQSTGR GRNVTVTNDG ATILKSLHID NPAAKVLVDI SKVQDDEVGD GTTSVVVLAG
101: ELLKEAEKLV NMKIHPMTII AGYRMALECA RDTLLQKTMD NKENTDKFRT DLMNIAMTTL SSKILSQDKE YFAELAVDAV LRLKGSTNLE SIQILKKPGG
201: SLKDSFLDEG FILDKKIGIG QPKRIENAKI LVANTAMDTD KVADIEAAEK QKMREKVQKI IGHGINCFVN RQLIYNFPEE LFADAGILAI EHADFEGIER
301: LALVTGGEIA STFDNPESVK LGHCKVIEEI MIGEDRLIHF SGVAMGQACT IVLRGASEHV LDEAERSLHD ALCVLSQTVN DTRVLFGGGW PEMVMAKEVD
401: ELARKTPGKK SHAIDAFSRA LQAIPTIIAD NAGLDSAELI SQLRAEHHKE NCTAGIDVIT GSVGDMQKLG IQESFKVKQA ILLSATEAAE MILRVDEIIT
501: CAPRRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.