CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007192_P001	Maize	cytosol	97.94	97.22
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	96.45	96.45
GSMUA_Achr1P14710_001	Banana	cytosol	91.96	91.96
GSMUA_Achr4P16540_001	Banana	cytosol	91.03	91.03
TraesCS6D01G383500.1	Wheat	unclear	90.65	90.65
TraesCS6A01G399300.1	Wheat	golgi	90.65	90.65
VIT_14s0006g03200.t01	Wine grape	cytosol	89.91	89.91
PGSC0003DMT400062134	Potato	cytosol	89.53	89.53
Solyc02g063090.2.1	Tomato	nucleus, unclear	89.53	89.53
Solyc02g085790.2.1	Tomato	extracellular	88.6	88.6
PGSC0003DMT400033011	Potato	cytosol	88.22	88.22
AT3G02530.1	Thale cress	cytosol	87.85	87.85
Bra040591.1-P	Field mustard	cytosol	87.85	87.85
CDY51544	Canola	cytosol	87.66	87.66
CDY28697	Canola	cytosol	87.66	87.66
KRH01781	Soybean	nucleus	87.66	87.66
CDY26490	Canola	cytosol	87.66	87.5
CDX69477	Canola	cytosol	87.66	87.5
Bra008652.1-P	Field mustard	cytosol	87.66	87.5
KRH46911	Soybean	endoplasmic reticulum	87.48	87.48
AT5G16070.1	Thale cress	cytosol	87.48	87.48
CDX78670	Canola	cytosol	87.48	87.48
CDX70671	Canola	cytosol	87.48	87.48
Bra006338.1-P	Field mustard	cytosol	73.64	86.78
HORVU6Hr1G091690.4	Barley	cytosol, plastid	90.28	84.74
EES00273	Sorghum	cytosol	28.97	30.39
EES00491	Sorghum	cytosol	29.35	29.9
EER97880	Sorghum	cytosol	27.29	27.29
EER88530	Sorghum	cytosol	26.92	26.92
EES05938	Sorghum	cytosol	27.29	26.79
EER95631	Sorghum	cytosol	25.98	25.98
EER92655	Sorghum	cytosol	25.79	24.73
EES04545	Sorghum	cytosol	25.23	24.11
EES09994	Sorghum	cytosol	23.93	23.36

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.6	Gene3D:3.50.7.10	EntrezGene:8084955	UniProt:C5X6A0	InterPro:Chap_CCT_zeta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlants:EER97762	ProteinID:EER97762	ProteinID:EER97762.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457
GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	EnsemblPlantsGene:SORBI_3002G423500
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.9123	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02347
UniParc:UPI0001A836DE	RefSeq:XP_002461241.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:77077923..77083703

Molecular Weight (calculated)

59147.7 Da

IEP (calculated)

6.651

GRAVY (calculated)

-0.219

Length

535 amino acids

Sequence
(BLAST)

001: MSLRVLNPNA QVLNKSEALH MTINAAKGLQ DVLKTNLGPK GTIKMLVGGA GDLKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDTSGDG TTSTVLFIGE
101: LMKQSERCID EGTHPRFLVD GFDVAKRACL DFLEKFKTPV VIGEEPDRDT LKMIARTTLR TKLYEGLADQ LTDIVVNAVL CISKPDEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CYILTCNVSL EYEKSEINAG FFYSNAEQRE KMVAAERRQV DERVKRIIEL KNKVCAGGDK NFVVINQKGI
301: DPPSLDLLAR AGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTEDCLGWA GLVYEHVLGE EKYTFVENVK NPRSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTIEDEAV VLGAGAFEVA AKKHLIDNVK KTVKGRAQLG VEAFAEALLV IPKTLAENSG LDTQDVIVSL QNEHDRGLVV GLNHHSGEPI DPQMEGIFDN
501: YSVKRQIINS GPIIASQLLL VDEVIRAGRN MRKPT

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.