CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008652.1-P	Field mustard	cytosol	100.0	100.0
CDY26490	Canola	cytosol	99.63	99.63
CDX78670	Canola	cytosol	98.32	98.5
CDX70671	Canola	cytosol	98.32	98.5
AT5G16070.1	Thale cress	cytosol	97.57	97.76
CDY28697	Canola	cytosol	97.01	97.2
CDY51544	Canola	cytosol	97.01	97.2
Solyc02g085790.2.1	Tomato	extracellular	91.6	91.78
PGSC0003DMT400062134	Potato	cytosol	91.6	91.78
Solyc02g063090.2.1	Tomato	nucleus, unclear	91.42	91.59
VIT_14s0006g03200.t01	Wine grape	cytosol	91.04	91.22
PGSC0003DMT400033011	Potato	cytosol	90.86	91.03
GSMUA_Achr1P14710_001	Banana	cytosol	90.49	90.65
GSMUA_Achr4P16540_001	Banana	cytosol	90.11	90.28
KRH46911	Soybean	endoplasmic reticulum	89.55	89.72
KRH01781	Soybean	nucleus	89.55	89.72
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	88.06	88.22
EER97762	Sorghum	cytosol	87.5	87.66
Zm00001d007192_P001	Maize	cytosol	87.31	86.83
TraesCS6D01G383500.1	Wheat	unclear	85.07	85.23
TraesCS6A01G399300.1	Wheat	golgi	85.07	85.23
HORVU6Hr1G091690.4	Barley	cytosol, plastid	85.07	80.0
CDX84951	Canola	cytosol	29.1	29.16
CDY51593	Canola	cytosol	29.1	29.1
CDY03881	Canola	cytosol	28.92	28.97
CDY54836	Canola	cytosol	28.73	28.79
CDY36138	Canola	cytosol	28.73	28.79
CDY72126	Canola	cytosol	11.19	28.3
CDY72106	Canola	cytosol	11.19	28.3
CDX70950	Canola	cytosol	26.87	27.32
CDY16573	Canola	cytosol	26.68	27.13
CDX92428	Canola	cytosol	26.68	27.13
CDY09085	Canola	cytosol	26.49	26.95
CDY11302	Canola	cytosol	6.34	26.56
CDY43747	Canola	cytosol	6.34	26.56
CDY71043	Canola	cytosol	15.49	26.35
CDY42227	Canola	cytosol	26.68	26.24
CDY25374	Canola	cytosol	26.68	26.24
CDX82264	Canola	cytosol	26.49	26.05
CDY24564	Canola	cytosol	26.49	26.05
CDY36063	Canola	cytosol	26.49	26.05
CDY18509	Canola	cytosol	25.19	25.42
CDY33444	Canola	cytosol	26.68	25.4
CDY24438	Canola	cytosol, plastid	25.19	25.33
CDX92212	Canola	cytosol, plastid	25.0	25.14
CDX95541	Canola	cytosol, plastid	25.0	25.09
CDY67306	Canola	cytosol	15.11	23.96
CDY18835	Canola	cytosol	24.63	23.78
CDY53919	Canola	cytosol	22.57	23.68
CDX74120	Canola	cytosol	24.44	23.6
CDX73850	Canola	cytosol	22.57	23.59
CDY08491	Canola	cytosol	22.01	23.41
CDY01062	Canola	cytosol	22.01	23.41
CDY47913	Canola	cytosol	11.38	23.37
CDY49990	Canola	cytosol	24.44	23.14
CDY21153	Canola	cytosol	22.95	22.61
CDX92056	Canola	cytosol	22.95	22.45
CDX74202	Canola	cytosol, plasma membrane	22.95	22.45
CDY29973	Canola	cytosol	22.76	22.43
CDY50868	Canola	cytosol	22.57	22.24
CDY42892	Canola	cytosol	22.57	22.24
CDY50320	Canola	cytosol	9.7	19.7
CDX79329	Canola	cytosol	9.33	18.94
CDX88835	Canola	mitochondrion	26.49	18.68

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.6	Gene3D:3.50.7.10	GO:A0A078BYN9	EnsemblPlants:CDX69477	ProteinID:CDX69477
ProteinID:CDX69477.1	InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00135467001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02347	UniParc:UPI0002544C2B	:	:	:	:

Description

BnaA10g18260D

Coordinates

chrLK031790:+:405663..409126

Molecular Weight (calculated)

59102.7 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.185

Length

536 amino acids

Sequence
(BLAST)

001: MSVRVLNPNA EVLNKTAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLENFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPEEGID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIDL KKKVCAGNDN NFVIINQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPESLGWA GLVYEHVLGE EKYTFVEQVK NPYSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTIEDECV VLGAGAFEVA ARQHLLNEVK KTVQGRPQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNVV GLNLQDGEPI DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPTA

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.