CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50320	Canola	cytosol	95.45	95.45
CDX74202	Canola	cytosol, plasma membrane	85.23	41.06
CDY29973	Canola	cytosol	84.47	40.99
CDY21153	Canola	cytosol	84.47	40.99
CDX92056	Canola	cytosol	84.85	40.88
CDY50868	Canola	cytosol	82.95	40.26
CDY42892	Canola	cytosol	82.2	39.89
Solyc01g088080.2.1	Tomato	nucleus	74.24	36.23
PGSC0003DMT400017609	Potato	cytosol	73.86	36.04
VIT_08s0007g07460.t01	Wine grape	cytosol	74.24	35.96
EES09994	Sorghum	cytosol	74.62	35.95
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	74.24	35.9
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	73.86	35.78
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	74.24	35.77
KRH70153	Soybean	nucleus	73.11	35.41
GSMUA_Achr8P04580_001	Banana	cytosol	72.35	35.11
GSMUA_Achr3P25570_001	Banana	cytosol	71.97	34.93
TraesCS4D01G157300.1	Wheat	cytosol	70.83	34.82
TraesCS4B01G165400.1	Wheat	cytosol	71.21	34.81
HORVU4Hr1G040660.1	Barley	cytosol	71.21	34.81
TraesCS4A01G164900.2	Wheat	cytosol	70.83	34.38
Zm00001d007508_P005	Maize	cytosol	74.24	34.21
TraesCS6D01G008000.1	Wheat	cytosol	66.29	30.7
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	61.74	30.7
CDY11302	Canola	cytosol	13.64	28.12
CDY43747	Canola	cytosol	13.64	28.12
CDY72126	Canola	cytosol	18.56	23.11
CDY72106	Canola	cytosol	18.56	23.11
CDY47913	Canola	cytosol	22.73	22.99
CDY67306	Canola	cytosol	18.56	14.5
CDX74120	Canola	cytosol	27.27	12.97
CDY18835	Canola	cytosol	26.89	12.79
CDY49990	Canola	cytosol	27.27	12.72
CDY42227	Canola	cytosol	25.38	12.29
CDY25374	Canola	cytosol	25.38	12.29
CDY24564	Canola	cytosol	25.38	12.29
CDY36063	Canola	cytosol	25.0	12.11
CDX82264	Canola	cytosol	25.0	12.11
CDY51593	Canola	cytosol	24.24	11.94
CDY33444	Canola	cytosol	25.38	11.9
CDY36138	Canola	cytosol	23.86	11.78
CDX84951	Canola	cytosol	23.86	11.78
CDY54836	Canola	cytosol	23.86	11.78
CDY03881	Canola	cytosol	23.86	11.78
CDY09085	Canola	cytosol	23.48	11.76
CDY16573	Canola	cytosol	22.73	11.39
CDX70950	Canola	cytosol	22.73	11.39
CDX92428	Canola	cytosol	22.73	11.39
CDY18509	Canola	cytosol	22.73	11.3
CDY24438	Canola	cytosol, plastid	22.73	11.26
CDX92212	Canola	cytosol, plastid	22.73	11.26
CDX95541	Canola	cytosol, plastid	22.73	11.24
CDY08491	Canola	cytosol	19.32	10.12
CDY01062	Canola	cytosol	19.32	10.12
CDY53919	Canola	cytosol	19.32	9.98
CDX73850	Canola	cytosol	19.32	9.94
CDY51544	Canola	cytosol	19.32	9.53
CDY28697	Canola	cytosol	19.32	9.53
CDX78670	Canola	cytosol	18.94	9.35
CDX70671	Canola	cytosol	18.94	9.35
CDX69477	Canola	cytosol	18.94	9.33
CDY26490	Canola	cytosol	18.94	9.33
CDX88835	Canola	mitochondrion	22.73	7.89
CDY71043	Canola	cytosol	4.92	4.13

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	GO:A0A078CTF2	EnsemblPlants:CDX79329	ProteinID:CDX79329
ProteinID:CDX79329.1	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00132007001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592
UniParc:UPI0004EDC456	SEG:seg	:	:	:	:

Description

BnaC06g19740D

Coordinates

chrLK031817:-:1393770..1395180

Molecular Weight (calculated)

28444.4 Da

IEP (calculated)

6.037

GRAVY (calculated)

0.016

Length

264 amino acids

Sequence
(BLAST)

001: MQLYSIQSML KEGYRHLSGL DKAVIKNIKA CKELSTITRT SLCPNGLNKM VINHSDKLFV TNDAAAIVNE LEIQHPAAKI LVLAAKAQQE EIGDGTNLTI
101: SFAGELLQNT DCRGACQDGV VEVLEELVES GSERMDVRSK GEVVSRMRDD VASKQFGQEE ITCSLVADAC IQVCPKNPTN FNVDNVRVAK FLAGGLHNSC
201: IVRGMVLESD VVGSIKRMVK AKVAVFAGGV DTTATETKGI VLIHSVEQIS SPGLKIQTVT LNVD

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.