Factsheet for Solyc01g088080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063090.2.1
Solyc02g085790.2.1
Solyc05g013990.2.1
Solyc06g065520.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	Solyc05g013990.2.1	AT1G24510.1	21798944
AT3G03960.1	Solyc06g065520.2.1	AT3G11830.1	21798944
AT3G03960.1	Solyc02g063090.2.1	AT5G16070.1	21798944
AT3G03960.1	Solyc02g085790.2.1	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017609	Potato	cytosol	98.52	98.52
VIT_08s0007g07460.t01	Wine grape	cytosol	88.17	87.52
KRH70153	Soybean	nucleus	87.99	87.34
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	87.99	87.34
GSMUA_Achr8P04580_001	Banana	cytosol	87.06	86.58
GSMUA_Achr3P25570_001	Banana	cytosol	86.88	86.4
EES09994	Sorghum	cytosol	86.88	85.77
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	86.69	85.58
TraesCS4B01G165400.1	Wheat	cytosol	85.4	85.56
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	86.14	85.35
TraesCS4A01G164900.2	Wheat	cytosol	85.4	84.93
TraesCS4D01G157300.1	Wheat	cytosol	84.1	84.73
HORVU4Hr1G040660.1	Barley	cytosol	84.47	84.63
CDY29973	Canola	cytosol	83.18	82.72
Bra036422.1-P	Field mustard	cytosol	83.18	82.72
CDY21153	Canola	cytosol	82.62	82.17
Bra001094.1-P	Field mustard	cytosol	82.62	81.57
CDX92056	Canola	cytosol	82.62	81.57
CDX74202	Canola	cytosol, plasma membrane	82.62	81.57
Zm00001d007508_P005	Maize	cytosol	85.95	81.15
Bra031959.1-P	Field mustard	cytosol	80.96	80.51
AT3G03960.1	Thale cress	cytosol	81.7	80.51
CDY50868	Canola	cytosol	80.59	80.15
CDY42892	Canola	cytosol	80.59	80.15
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	78.0	79.47
CDY50320	Canola	cytosol	37.15	76.14
TraesCS6D01G008000.1	Wheat	cytosol	80.04	75.96
CDX79329	Canola	cytosol	36.23	74.24
Solyc01g090750.2.1	Tomato	nucleus	28.1	27.89
Solyc03g118910.1.1	Tomato	plastid	27.36	27.46
Solyc11g069000.1.1	Tomato	extracellular	25.32	26.05
Solyc05g056310.2.1	Tomato	extracellular, plastid	26.25	25.49
Solyc06g065520.2.1	Tomato	nucleus, plastid	25.88	25.09
Solyc05g013990.2.1	Tomato	nucleus	24.4	24.67
Solyc02g085790.2.1	Tomato	extracellular	24.4	24.67
Solyc02g063090.2.1	Tomato	nucleus, unclear	24.21	24.49

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150	GO:GO:0009506
GO:GO:0009987	GO:GO:0016020	GO:GO:0044183	GO:GO:0051050	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K4AYJ8
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc01g088080.2	EnsemblPlants:Solyc01g088080.2.1	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02346	UniParc:UPI0002761750	:	:	:	:

Description

T-complex protein 1 subunit theta [Source:Projected from Arabidopsis thaliana (AT3G03960) UniProtKB/Swiss-Prot;Acc:Q94K05]

Coordinates

chr1:+:82917932..82926743

Molecular Weight (calculated)

58410.5 Da

IEP (calculated)

5.222

GRAVY (calculated)

-0.062

Length

541 amino acids

Sequence
(BLAST)

001: MQPYGIQSML KEGHKHLSGL DEAVLKNIDA CKQLSTITRT SLGPNGMNKM VINHLDKLFV TNDAATIVNE LEVQHPAAKI LVLAGKAQQE EIGDGANLTV
101: SFAGELLQNA EELIRMGLHP SEIIIGYNKA INKTIELLDE LVEAGSENMN VKDKNEVISR MKSAVASKQF GLEDVLCPLV AEACIQVCPK NPANFNVDNV
201: RVAKLLGGGL HNSTIVRGMV LKSDAVGSIK RIEKAKVAVF VQGVDTSTTE TKGTVLIHSA EQLENYAKTE EAKVEELIKS VADSGAKVIV SGAAVGEMAL
301: HFCERYKLMV LKISSKFELR RFCRTTGAVA LLKLSQPNPD DLGHVDSVSV EEIGGVRVTV VRNEDGGNSV STVVLRGSTD SILDDLERAV DDGVNTYKAM
401: CRDSRIVPGA AATEIELARK LKEFSFKEMG LDQYAIAKFA ESFEMVPKTL AENAGLNAME IISSLYAEHA SGNVKVGLNL EKGACEDISG LSIWDLYVTK
501: YFALKYAADA VCTVLRVDQI IMSKPAGGPG RREQPAGMDE D

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.