Factsheet for VIT_08s0007g07460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0670g00010.t01
VIT_01s0137g00250.t01
VIT_12s0028g00350.t01
VIT_14s0006g03200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	VIT_01s0137g00250.t01	AT1G24510.1	21798944
AT3G03960.1	VIT_12s0028g00350.t01	AT1G24510.1	21798944
AT3G03960.1	VIT_00s0670g00010.t01	AT3G11830.1	21798944
AT3G03960.1	VIT_14s0006g03200.t01	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P25570_001	Banana	cytosol	89.54	89.71
GSMUA_Achr8P04580_001	Banana	cytosol	88.99	89.15
KRH70153	Soybean	nucleus	88.81	88.81
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	88.81	88.81
Solyc01g088080.2.1	Tomato	nucleus	87.52	88.17
PGSC0003DMT400017609	Potato	cytosol	87.16	87.8
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	87.16	87.0
EES09994	Sorghum	cytosol	86.79	86.31
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	86.42	85.95
HORVU4Hr1G040660.1	Barley	cytosol	83.67	84.44
Bra036422.1-P	Field mustard	cytosol	84.22	84.38
TraesCS4B01G165400.1	Wheat	cytosol	83.49	84.26
CDY29973	Canola	cytosol	83.85	84.01
CDY21153	Canola	cytosol	83.67	83.82
TraesCS4A01G164900.2	Wheat	cytosol	83.49	83.64
TraesCS4D01G157300.1	Wheat	cytosol	82.39	83.61
CDX92056	Canola	cytosol	83.85	83.39
CDX74202	Canola	cytosol, plasma membrane	83.49	83.03
Bra001094.1-P	Field mustard	cytosol	83.49	83.03
AT3G03960.1	Thale cress	cytosol	83.49	82.88
Bra031959.1-P	Field mustard	cytosol	82.02	82.17
Zm00001d007508_P005	Maize	cytosol	86.24	82.02
CDY50868	Canola	cytosol	81.83	81.99
CDY42892	Canola	cytosol	81.83	81.99
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	77.61	79.66
TraesCS6D01G008000.1	Wheat	cytosol	80.55	77.02
CDY50320	Canola	cytosol	37.06	76.52
CDX79329	Canola	cytosol	35.96	74.24
VIT_15s0021g02230.t01	Wine grape	cytosol	29.54	29.49
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	26.97	27.58
VIT_17s0000g08170.t01	Wine grape	cytosol	27.89	27.29
VIT_07s0130g00410.t01	Wine grape	cytosol	27.52	26.93
VIT_18s0001g00480.t01	Wine grape	cytosol	25.69	26.46
VIT_12s0028g00350.t01	Wine grape	cytosol	24.59	25.05
VIT_00s0670g00010.t01	Wine grape	cytosol	25.69	24.91
VIT_14s0006g03200.t01	Wine grape	cytosol	24.4	24.86
VIT_01s0137g00250.t01	Wine grape	cytosol	25.5	21.0
VIT_05s0094g00640.t01	Wine grape	cytosol	5.5	18.63

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100257135	wikigene:100257135	MapMan:20.3.1.8	Gene3D:3.50.7.10	ProteinID:CBI29936
ProteinID:CBI29936.3	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1
UniProt:D7TI60	EMBL:FN595991	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EntrezGene:LOC100257135	wikigene:LOC100257135	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
TIGR:TC60958	TIGR:TC66134	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346	UniParc:UPI00015CA7C2	ArrayExpress:VIT_08s0007g07460
EnsemblPlantsGene:VIT_08s0007g07460	EnsemblPlants:VIT_08s0007g07460.t01	unigene:Vvi.15825	RefSeq:XP_002282088	RefSeq:XP_002282088.1	:

Description

No Description!

Coordinates

chr8:+:20986896..20994138

Molecular Weight (calculated)

58894.1 Da

IEP (calculated)

5.326

GRAVY (calculated)

-0.053

Length

545 amino acids

Sequence
(BLAST)

001: MGFQMQPYGV QSMLKEGHKH LSGLEEAVLK NIDACKQLSV ITRTSLGPNG MNKMVINHLD KIFVTNDAAT IVNELEVQHP AAKILVLASK AQQEEIGDGA
101: NLTISFAGEL LQNAEELIRM GLHPSEIISG YSKAINKTVE ILEELVEKGS EKMDVRNKEQ VISRMKAAVA SKQFGQEDIL CPLIADACIQ VCPKNPVNFN
201: VDNVRVAKLL GGGLHNCTVV RGMALKTDAV GSIKRVEKAK VAVFASGVDT SATETKGTVL IHSAEQLENY AKTEEAKIEE LIKAVADSGA KVIVSGGAVG
301: EMALHFCERY KLMVLKISSK FELRRFCRTT GAVAVLKLSQ PNPDDLGYVD SVSVEEIGGV RVTIVKNEEG GNSVCTVVLR GSTDSILDDL ERAVDDGVNT
401: YKAMCRDSRI VPGAAATEIE LARKLKEFSF KETGLDQYAI AKFAESFEMV PKTLAENAGL NAMEIISSLY AEHSTGNTKV GIDLDQGVVC KDVSTMNVWD
501: LYITKYFALK YAADAACTVL RVDQIIMAKP AGGPKRDPAA GMDED

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.