CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88530
EER97762
EER97880
EES04545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	EER88530	AT1G24510.1	21798944
AT3G03960.1	EER97880	AT1G24510.1	21798944
AT3G03960.1	EES04545	AT3G11830.1	21798944
AT3G03960.1	EER97762	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	97.63	97.63
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	95.62	95.97
Zm00001d007508_P005	Maize	cytosol	98.18	93.89
HORVU4Hr1G040660.1	Barley	cytosol	91.24	92.59
TraesCS4B01G165400.1	Wheat	cytosol	91.06	92.41
TraesCS4A01G164900.2	Wheat	cytosol	91.06	91.73
TraesCS4D01G157300.1	Wheat	cytosol	89.6	91.43
GSMUA_Achr3P25570_001	Banana	cytosol	87.04	87.68
GSMUA_Achr8P04580_001	Banana	cytosol	87.04	87.68
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	86.5	86.97
Solyc01g088080.2.1	Tomato	nucleus	85.77	86.88
PGSC0003DMT400017609	Potato	cytosol	85.77	86.88
VIT_08s0007g07460.t01	Wine grape	cytosol	86.31	86.79
KRH70153	Soybean	nucleus	86.31	86.79
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	83.03	85.69
TraesCS6D01G008000.1	Wheat	cytosol	86.31	82.98
Bra036422.1-P	Field mustard	cytosol	81.57	82.17
CDY29973	Canola	cytosol	81.2	81.8
CDY21153	Canola	cytosol	81.02	81.62
CDX92056	Canola	cytosol	81.39	81.39
AT3G03960.1	Thale cress	cytosol	81.39	81.24
Bra001094.1-P	Field mustard	cytosol	80.84	80.84
CDX74202	Canola	cytosol, plasma membrane	80.84	80.84
Bra031959.1-P	Field mustard	cytosol	79.93	80.51
CDY50868	Canola	cytosol	79.74	80.33
CDY42892	Canola	cytosol	79.74	80.33
CDY50320	Canola	cytosol	36.68	76.14
CDX79329	Canola	cytosol	35.95	74.62
EES05938	Sorghum	cytosol	27.19	27.34
EES00273	Sorghum	cytosol	25.18	27.06
EER95631	Sorghum	cytosol	26.28	26.92
EES00491	Sorghum	cytosol	25.55	26.67
EER92655	Sorghum	cytosol	27.01	26.52
EER97880	Sorghum	cytosol	24.64	25.23
EER88530	Sorghum	cytosol	24.45	25.05
EES04545	Sorghum	cytosol	25.36	24.82
EER97762	Sorghum	cytosol	23.36	23.93

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8071962	UniProt:C5Y4Y9
InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlants:EES09994
ProteinID:EES09994	ProteinID:EES09994.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150	GO:GO:0009506
GO:GO:0009987	GO:GO:0016020	GO:GO:0044183	GO:GO:0051050	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	EnsemblPlantsGene:SORBI_3005G163700
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.12578	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346
UniParc:UPI0001A86C44	RefSeq:XP_002451006.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:63897131..63902017

Molecular Weight (calculated)

58994.2 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.045

Length

548 amino acids

Sequence
(BLAST)

001: MVGLGSMAGY GIQSMLKEGH RHLSGLEEAV LKNIDACREL SAITRTSLGP NGMNKMVINH LDKLFVTNDA ATIVNELEVQ HPAAKILVLA GRAQQEEIGD
101: GANLTISFAG ELLEKAEELI RMGLHPSEII IGYTKAINKT IEILEDLVEK GSENMDVRNK EEVVLRMRSA VASKQFGQED IMCPLVADAC IQVCPKNPAN
201: FNVDNVRVAK LLGGGLHNSS VVRGMVLKND AVGSIKRVEK AKIAVFAGGV DTSATETKGT VLIHSAEQLE NYAKTEEAKV EELIKAVADS GAKVIVSGAA
301: VGDMALHFCE RYKLMVLKIS SKFELRRFCR TTGAIAILKL SQPNAEELGY ADSVSVEEIG GTRVTVVKNE EGGNSVATVV LRGSTDSILD DLERAVDDGV
401: NTYKSMCRDS RIIPGAAATE IELAKRLKEF SLKETGLDQY AIAKFAESFE MVPRTLAENA GLSAMEIISS LYAEHASGNV KVGIDLEEGA CKDISTLKIW
501: DLYVTKFFAL KYSADAACTV LRVDQIIMAK PAGGPRRDAQ PGGGMDED

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.