CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052056_P005	Maize	plasma membrane	98.53	98.53
Zm00001d018349_P001	Maize	cytosol	98.17	98.17
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	97.43	97.43
HORVU1Hr1G052730.26	Barley	cytosol	66.61	93.56
TraesCS1D01G208500.1	Wheat	cytosol	84.59	92.57
TraesCS1A01G205200.1	Wheat	cytosol	92.11	92.11
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	91.56	91.56
TraesCS1B01G218800.1	Wheat	cytosol	78.72	90.89
TraesCS7A01G062100.1	Wheat	cytosol	90.83	90.83
TraesCS7A01G217200.1	Wheat	cytosol	90.83	90.83
TraesCS7D01G056800.1	Wheat	cytosol	90.83	90.83
TraesCS4A01G427500.1	Wheat	cytosol, unclear	90.46	90.46
VIT_15s0021g02230.t01	Wine grape	cytosol	89.72	89.56
KRH59103	Soybean	nucleus	88.99	88.99
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	88.99	88.99
TraesCS7D01G218500.2	Wheat	cytosol	91.19	87.04
AT3G20050.1	Thale cress	cytosol	86.06	86.06
Solyc01g090750.2.1	Tomato	nucleus	85.87	85.87
CDY25374	Canola	cytosol	85.69	85.69
CDY42227	Canola	cytosol	85.5	85.5
CDY24564	Canola	cytosol	85.5	85.5
PGSC0003DMT400066954	Potato	cytosol	85.5	85.5
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	42.57	84.67
CDX82264	Canola	cytosol	84.22	84.22
Bra001773.1-P	Field mustard	cytosol	84.22	84.07
CDY36063	Canola	cytosol	84.04	84.04
Bra035820.1-P	Field mustard	cytosol	85.5	83.81
CDY33444	Canola	cytosol	85.32	82.59
HORVU7Hr1G044070.2	Barley	cytosol	86.06	82.14
Bra038252.1-P	Field mustard	cytosol	85.5	61.24
EES00273	Sorghum	cytosol	33.95	36.27
EES00491	Sorghum	cytosol	34.68	36.0
EES04545	Sorghum	cytosol	34.86	33.93
EER97880	Sorghum	cytosol	31.56	32.15
EER88530	Sorghum	cytosol	31.38	31.96
EER95631	Sorghum	cytosol	30.46	31.03
EER92655	Sorghum	cytosol	29.17	28.49
EER97762	Sorghum	cytosol	26.79	27.29
EES09994	Sorghum	cytosol	27.34	27.19

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8081971	UniProt:C5XUD0
InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlants:EES05938	ProteinID:EES05938
ProteinID:EES05938.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF177	EnsemblPlantsGene:SORBI_3004G326600	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.9040
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	UniParc:UPI0001A85B14	RefSeq:XP_002452962.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:66148318..66155045

Molecular Weight (calculated)

59186.7 Da

IEP (calculated)

5.932

GRAVY (calculated)

-0.064

Length

545 amino acids

Sequence
(BLAST)

001: MAITATTPDI LGERQSGQDV RTQNVMACGA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILKMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIIA
101: AELLKRGNDL VKNKIHPTSI ISGYRLAMRE ACKYVEEKLA VKVDKLGKDS LINSAKTSMS SKLINSDSDF FATLVVEAVQ AVKTTNAKGE VKYPIKSINI
201: LKAHGKSAKD SYLLNGYALN TGRAAQGMPT RVTPARIACL DFNLQKTKMQ LGVQVLVTDP RELEKIRQRE SDIMKERIEK ILKAGANVVL TTKGIDDMSL
301: KYFVEAGAIA VRRVRKEDLR HVAKATGATM VSTFADMEGE ETFDASFLGH ADEVVEERIA DDDVILVKGT KNTSAVSIIL RGANDFMLDE IDRSLHDALC
401: IVKRTLESNM VVAGGGAVEA ALSVYLENLA TTLGSREQLA IAEFAESLLI IPKVLSVNAA KDATELVAKL RAYHHTAQTK ADKQHYSSMG LDLSKGIIRN
501: NLEYGVIEPS MSKVKIIQFA TEAAITILRI DDMIKLTKEE GNEEE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.